View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438_high_7 (Length: 428)
Name: NF5438_high_7
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 34566828 - 34567239
Alignment:
| Q |
1 |
aaaactcgacattcttcgtgctgttgtaacaactttatcgttgtaggaataaattgttccgactctgaaacctggtagaccgagatctttagaaagacta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34566828 |
aaaactcgacattcttcgtgctgttgtaacaactttatcgttgtaggaataaattgttccgactctgaaacctggtagaccgagatctttagaaagacta |
34566927 |
T |
|
| Q |
101 |
taaacaatgtgacatctttccgcgtctttgtattgacgagattcaagaatctcggctatgcttatgaattcatgtgaagagaaaactgagcccgagtaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34566928 |
taaacaatgtgacatctttccgcgtctttgtattgacgagattcaagaatctcggctatgcttatgaattcatgtgaagagaaaactgagcccgagtaga |
34567027 |
T |
|
| Q |
201 |
tttcgtctgagacaaggtgtatgttcttgcgagtcacgaagttcagaatgtcctcgagaactgaacgttgaatcgatatgcctaatggatttgatgggtt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34567028 |
tttcgtctgagacaaggtgtatgttcttgcgagtcacgaagttcagaatgtcctcgagaactgaacgttgaatcgatatgcctaatggatttgatgggtt |
34567127 |
T |
|
| Q |
301 |
ggttataagtactgcttttactttcatgttcatggattctgcatttttgtatgcagtttctaatgcttcaagtgtgatttgaaaattgtttgaactatca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34567128 |
ggttataagtactgcttttactttcatgttcatggattctgcatttttgtatgcagtttctaatgcttcaagtgtgatttgaaaattgtttgagctatca |
34567227 |
T |
|
| Q |
401 |
caatggattgga |
412 |
Q |
| |
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|||||||||||| |
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| T |
34567228 |
caatggattgga |
34567239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 42789155 - 42789547
Alignment:
| Q |
1 |
aaaactcgacattcttcgtgctgttgtaacaactttatcgttgtaggaataaattgttccgactctgaaacctggtagaccgagatctttagaaagacta |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||| |
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| T |
42789155 |
aaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagacta |
42789254 |
T |
|
| Q |
101 |
taaacaatgtgacatctttccgcgtctttgtattgacgagattcaagaatctcggctatgcttatgaattcatgtgaagagaaaactgagcccgagtaga |
200 |
Q |
| |
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|| ||||||||| ||| || || ||||||||| |||||| |||||||||||| |||||||||| || ||| ||| || ||||| || ||||||| |
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| T |
42789255 |
tagacaatgtgaactctctctgcatctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtaga |
42789354 |
T |
|
| Q |
201 |
tttcgtctgagacaaggtgtatgttcttgcgagtcacgaagttcagaatgtcctcgagaactgaacgttgaatcgatatgcctaatggatttgatgggtt |
300 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||||| |||| ||||| || || ||||||||||||| || | ||| |||||||| ||||| ||||| |
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| T |
42789355 |
tttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatctcttctagaactgaacgtttaactgttatacctaatgggtttgaagggtt |
42789454 |
T |
|
| Q |
301 |
ggttataagtactgcttttactttcatgttcatggattctgcatttttgtatgcagtttctaatgcttcaagtgtgatttgaaaattgtttga |
393 |
Q |
| |
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|| || || ||| | | |||||||||||||| |||||||| | |||||| || | |||||| |||| |||| ||||||||||||||||| |
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| T |
42789455 |
tgtgatcagcactccactcactttcatgttcattgattctgcttctttgtaagctgcttctaaagcttttggtgtaatttgaaaattgtttga |
42789547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 42798693 - 42799086
Alignment:
| Q |
1 |
aaaactcgacattcttcgtgctgttgtaacaactttatcgttgtaggaataaattgttccgactctgaaacctggtagaccgagatctttagaaagacta |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||| |
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| T |
42798693 |
aaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagacta |
42798792 |
T |
|
| Q |
101 |
taaacaatgtgacatctttccgcgtctttgtattgacgagattcaagaatctcggctatgcttatgaattcatgtgaagagaaaactgagcccgagtaga |
200 |
Q |
| |
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|| ||||||||| ||| || || ||||||||| |||||| |||||||||||| |||||||||| || ||| ||| || ||||| || ||||||| |
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| T |
42798793 |
tagacaatgtgaactctctctgcatctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtaga |
42798892 |
T |
|
| Q |
201 |
tttcgtctgagacaaggtgtatgttcttgcgagtcacgaagttcagaatgtcctcgagaactgaacgttgaatcgatatgcctaatggatttgatgggtt |
300 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||||| |||| ||||| || || ||||||||||||| || | ||| |||||||| ||||| ||||| |
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| T |
42798893 |
tttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatctcttctagaactgaacgtttaactgttatacctaatgggtttgaagggtt |
42798992 |
T |
|
| Q |
301 |
ggttataagtactgcttttactttcatgttcatggattctgcatttttgtatgcagtttctaatgc-ttcaagtgtgatttgaaaattgtttga |
393 |
Q |
| |
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|| || || ||| | | |||||||||||||| |||||||| | |||||| || | |||||| || || |||| ||||||||||||||||| |
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|
| T |
42798993 |
tgtgatcagcactccactcactttcatgttcattgattctgcttctttgtaagctgcttctaaagctttttggtgtaatttgaaaattgtttga |
42799086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 410
Target Start/End: Complemental strand, 1462339 - 1462267
Alignment:
| Q |
337 |
ttctgcatttttgtatgcagtttctaatgcttcaagtgtgatttgaaaattgtttgaactatcacaatggattg |
410 |
Q |
| |
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|||||||||||||||| || ||| |||||||| |||||||||||||||||||||||| || ||||| ||||||| |
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| T |
1462339 |
ttctgcatttttgtatacaatttttaatgctt-aagtgtgatttgaaaattgtttgagctgtcacactggattg |
1462267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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