View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438_low_1 (Length: 665)
Name: NF5438_low_1
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 16 - 496
Target Start/End: Complemental strand, 28675704 - 28675212
Alignment:
| Q |
16 |
acaacccaccactaaaaagggtcgtccctcctccggtgacggagctccgagtaaatgccgctgccgtttttggtgggtcccacatactctcttttgttgc |
115 |
Q |
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| T |
28675704 |
acaacccaccactaaaaagggtcgtccctcctccggtgacggagctccgagtaaatgccgctgccctttttggtgggtcccacatactctcttttgttgc |
28675605 |
T |
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| Q |
116 |
cattttgttaggaaggattcagtttgctgctttggatttcgaagaaaaggtaaagcttcaaaagtttcagaagcttcaatgaaaaatggttcaaaagaat |
215 |
Q |
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| T |
28675604 |
cattttgttaggaaggattcagtttgctgctttggatttcgaagaaaaagtaaagcttcaaaagtttcagaagcttcaatgaaaaatggttcaaaagaat |
28675505 |
T |
|
| Q |
216 |
cacatatagaagaagaagaagaggaa------------aataacagagtatttaaagctaaagttttagtttctgattctaatgattcttccactttttg |
303 |
Q |
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| T |
28675504 |
catatatagaagaagaagaagaagaagaagaagaagaaaataacagagtatttaaagctaaagttttagtttctgattctaatgattcttccactttttg |
28675405 |
T |
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| Q |
304 |
ttctactccaccaaaaaatgctttgttactaactagatgcaaatcagcaccatatagttcatcttcactagcaagtaggttttggggttctcctttaagg |
403 |
Q |
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| T |
28675404 |
ttctactccaccaaaaaatgctttgttactaactagatgcaaatcagcaccatatagttcatcttcactagcaagtaggttttggggttctcctttaagg |
28675305 |
T |
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| Q |
404 |
aatgaagaaacagagcaaccctctgaggagaaacagagtgagtctgtttcagtttcaaagttgagatttttcaaagaacctgaagattcagcg |
496 |
Q |
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| T |
28675304 |
aatgaagaaacagagcaaccctctgaggagaaacagagtgagtctgtttcagtttcaaagttgagatttttcaaagaacttgaagattcagcg |
28675212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 561 - 665
Target Start/End: Complemental strand, 28675147 - 28675043
Alignment:
| Q |
561 |
gagaatctatagcatttcctctagtgctaacaagatgcaaatctgaacgagcaggaaaagcttgatccaaaggtttttgcagataccttcttctttacat |
660 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28675147 |
gagaatctatagcatttcctctagtgctaacaagatgcaaatctgaacgagcaagaaaatcttgatccaaaggtttttgcagataccttcttctttacat |
28675048 |
T |
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| Q |
661 |
ggttt |
665 |
Q |
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||||| |
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| T |
28675047 |
ggttt |
28675043 |
T |
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