View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438_low_11 (Length: 383)
Name: NF5438_low_11
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 47 - 370
Target Start/End: Complemental strand, 34523055 - 34522732
Alignment:
| Q |
47 |
gaacctatgatgatcatttgaacatgtcttgaggaaaactgaaggcaatgaagaaatgttattagtcttcaatctcttacaactgatacctttttcctca |
146 |
Q |
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| T |
34523055 |
gaacctatgatgatcatttgaacatgtcttgaggaaaacagaaggcaatgaagaaatgttattagtcttcaatctcttacaattgatacctttttcctca |
34522956 |
T |
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| Q |
147 |
caaggaagtacagttgatgatttttgtccaaacattcctaaagacaaacttgtttcaacacaatcattacaatctaaaaaattgtcttctctagcattga |
246 |
Q |
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| T |
34522955 |
caaggaagtacagttgatgatttttgtccaaacattcctaaagacaaacttgtttcaacacaatcattacaatctaaaaaattgtcttctctagcattga |
34522856 |
T |
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| Q |
247 |
caatagttgagacaattctagaaggtgagagggaccttcttctagaacaaggtttaagttgatgataattacaatctatttttgatgtcgtttttgcaga |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
34522855 |
caatagttgagacaattctagaaggtgagagggaccttcttctagaacaaggtttaagttgatgataattacaatctatttttgatgacatttttgcaga |
34522756 |
T |
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| Q |
347 |
aaaataatgattacctagtgatga |
370 |
Q |
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| T |
34522755 |
aaaataatgattacctagtgatga |
34522732 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 31726940 - 31726902
Alignment:
| Q |
90 |
ggcaatgaagaaatgttattagtcttcaatctcttacaa |
128 |
Q |
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| T |
31726940 |
ggcaatgaagaaatgttgttggtcttcaatctcttacaa |
31726902 |
T |
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