View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438_low_13 (Length: 352)
Name: NF5438_low_13
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 33925864 - 33926192
Alignment:
| Q |
9 |
gattattctagcagataagctcaaatatgtcgatccaaacaaacttttatggtgttactgtttaagatgagaacttgcaacttgacattataaaatccat |
108 |
Q |
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| T |
33925864 |
gattattctagcagataagctcaaatatgtcgatccaaacaaacttttatggtgttactgtttaagatgagaacttgcaacttgacattataaaatccat |
33925963 |
T |
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| Q |
109 |
gaattagggcaccaatacaagaattactaggctagttctgcatgagttggaactacaggtactagaaaattgccataaggtgaataaaaaatcctataat |
208 |
Q |
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| T |
33925964 |
gaattagggcaccaatacaagaattactaggctagttctgcatgagttggaactacaggtactagaaaattgccataaggtgaataaaaaatcctataat |
33926063 |
T |
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| Q |
209 |
tcccagtacaaccatcttgttgtgcttgtgttgctgcaaaagatttgttctgtgaaactgtagaattgattccactagattgggctgcaacctacacatg |
308 |
Q |
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| T |
33926064 |
tcccagtacaaccatcttgttgtgcttgtgttgctgcaaaagatttgttctgtgaaactgtagaattgattccactagattgggctgcaacctacacatg |
33926163 |
T |
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| Q |
309 |
ccagaccaataaatatattcaatgtaagt |
337 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33926164 |
ccagaccaataaatatattcaatgtaagt |
33926192 |
T |
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