View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438_low_15 (Length: 333)
Name: NF5438_low_15
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 25 - 323
Target Start/End: Complemental strand, 13518996 - 13518698
Alignment:
| Q |
25 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatcgaaatggctgaaaaa |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13518996 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatagaaatggctgaaaaa |
13518897 |
T |
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| Q |
125 |
gaggaagttaatatgatttctgaacaactacctttggataaattgaataacaagggtcagtattggattccaacaccttctcaaattctcattggtccta |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13518896 |
gaggaagttaatatgatttctgaacaactacctttggataaattgaataacaagggtcagtattggattccaacaccttctcaaattctcattggtccta |
13518797 |
T |
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| Q |
225 |
cacaattctcatgtcctgtgtgctctaaaactttcaacagatacaacaatcttcaggtactattacttccacatttagatcttgaaaactatgcctttg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13518796 |
cacaattctcatgtcctgtgtgctctaaaactttcaacagatacaacaatcttcaggtactattacttccacatttagatcttgaaaactatgcttttg |
13518698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 25 - 323
Target Start/End: Complemental strand, 13608529 - 13608231
Alignment:
| Q |
25 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatcgaaatggctgaaaaa |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13608529 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatagaaatggctgaaaaa |
13608430 |
T |
|
| Q |
125 |
gaggaagttaatatgatttctgaacaactacctttggataaattgaataacaagggtcagtattggattccaacaccttctcaaattctcattggtccta |
224 |
Q |
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| T |
13608429 |
gaggaagttaatatgatttctgaacaactacctttggataaattgaataacaagggtcagtattggattccaacaccttctcaaattctcattggtccta |
13608330 |
T |
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| Q |
225 |
cacaattctcatgtcctgtgtgctctaaaactttcaacagatacaacaatcttcaggtactattacttccacatttagatcttgaaaactatgcctttg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13608329 |
cacaattctcatgtcctgtgtgctctaaaactttcaacagatacaacaatcttcaggtactattacttccacatttagatcttgaaaactatgcttttg |
13608231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 172 - 273
Target Start/End: Complemental strand, 21038468 - 21038367
Alignment:
| Q |
172 |
taacaagggtcagtattggattccaacaccttctcaaattctcattggtcctacacaattctcatgtcctgtgtgctctaaaactttcaacagatacaac |
271 |
Q |
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||||||||||||||||||||| || || |||||||| ||||| |||||||||||||||||||| |||||||| |||| ||||| ||||||||||||||| |
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| T |
21038468 |
taacaagggtcagtattggatccctactccttctcagattcttattggtcctacacaattctcttgtcctgtttgctgcaaaaccttcaacagatacaac |
21038369 |
T |
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| Q |
272 |
aa |
273 |
Q |
| |
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|| |
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|
| T |
21038368 |
aa |
21038367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 36568460 - 36568561
Alignment:
| Q |
172 |
taacaagggtcagtattggattccaacaccttctcaaattctcattggtcctacacaattctcatgtcctgtgtgctctaaaactttcaacagatacaac |
271 |
Q |
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|||||| || || |||||||| || || ||||||||||||||||||||||| || || ||||| || ||||| ||||| ||||||||||| ||||| ||| |
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| T |
36568460 |
taacaaaggacaatattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataac |
36568559 |
T |
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| Q |
272 |
aa |
273 |
Q |
| |
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|| |
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|
| T |
36568560 |
aa |
36568561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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