View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438_low_16 (Length: 327)
Name: NF5438_low_16
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_low_16 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 25606711 - 25606401
Alignment:
| Q |
18 |
cacagactaaattaactatttactaaaataaaaaactatgcttaagaatcttgaagcagcaaagtatattgcaaaataaaaagagtgatgcatgccattt |
117 |
Q |
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| T |
25606711 |
cacagactaaattaactatttactaaaataaaaaactatgcttaagaatcttgaagcagcaaagtatattgcaaaataaaaagagtgatgcatgccattt |
25606612 |
T |
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| Q |
118 |
atatcaagtgactgaatttatacaaacaagtagcgactcagttacataaacaagtaagtaagccatcaataaaagtaaaatcatctaa-aaaaggttctc |
216 |
Q |
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| T |
25606611 |
atatcaagtgactgaatttatacaaacaagtagcgactcagttacataaacaagtaagtaagccatcaataaaagtaaaatcatctaaaaaaaggttctc |
25606512 |
T |
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| Q |
217 |
aatttttagaatcaaatggcaactccagcaatgtaacaacaatagactgactctgaagtttactgaggatttggaggacggctattggcagcagagactc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25606511 |
aatttttagaatcaaatggcaactccagcaatgtaacaacaatagactgactctgaagtttactgaggatttggaggacggctattggcagcagagactc |
25606412 |
T |
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| Q |
317 |
tggagccccac |
327 |
Q |
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| T |
25606411 |
tggagccccac |
25606401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 48 - 327
Target Start/End: Complemental strand, 25626326 - 25626042
Alignment:
| Q |
48 |
aaaaactatgcttaagaatcttgaagcagcaaagtatattgcaaaataaaaagag--tgatgcatgccatttatatcaagtgactgaatttatacaaaca |
145 |
Q |
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||||||||||||||| || ||||||||||||||||| | |||||||||| | | || |||||| ||||||| |||| |||||||||| ||||||||| |
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| T |
25626326 |
aaaaactatgcttaatgatattgaagcagcaaagtat--tacaaaataaaatgggggtggtgcatgacatttatctcaa-tgactgaattaatacaaaca |
25626230 |
T |
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| Q |
146 |
agtagcgactcagttacataaacaagtaagtaagccatcaataaaag-------taaaat----catctaaaaaaggttctcaatttttagaatcaaatg |
234 |
Q |
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| T |
25626229 |
agtagcgactaggacacataaacaagaaag----ccatcaataaaagggttccttacaatatcacatctaaaag-ggttctcaatatttagaatcaagtt |
25626135 |
T |
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| Q |
235 |
gcaactccagcaatgtaacaacaatagactgactctgaagtttactgaggatttggaggacggctattggcagcagagactctggagccccac |
327 |
Q |
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| T |
25626134 |
gcaatttcagtaaagtggcaacaatagactgactctgaagtttactgaggatttggaggacggctattggcagcagagactctggagccccac |
25626042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 933053 - 933151
Alignment:
| Q |
71 |
aagcagcaaagtatattgcaaaataaaaagagtgatgcatgccatttatatcaagtgactgaattt----atacaaacaagtagcgactcagttacata |
165 |
Q |
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| T |
933053 |
aagcagcaaagtatattacaaaataaaaagagtgatgcatgtcatttatctcaagtgactgaatttatacatacaaacaagtaacgactcagttccata |
933151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 933212 - 933240
Alignment:
| Q |
210 |
ggttctcaatttttagaatcaaatggcaa |
238 |
Q |
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| T |
933212 |
ggttctcaatttttagaatcaaatggcaa |
933240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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