View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438_low_18 (Length: 304)
Name: NF5438_low_18
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 6260154 - 6260425
Alignment:
| Q |
17 |
atatatgggtggccgtttctggtttgagcttgagcctgagaattagttagtaatttgtatcagtgttcggtttaagacgctgtcgtgcaaggtatcacga |
116 |
Q |
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| T |
6260154 |
atatatgggtggccgtttctggtttgagcttgagcctgagaattagttagtaatttgtatcagtgttcggtttaagacgctgtcgtgcaaggtatcgcga |
6260253 |
T |
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| Q |
117 |
ttctgtatttgttaattcaacagtatcagtgctgttttatcagttaaggttgcagattttggcagagtagtttatggtagcttcttcatgtgaaccttca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6260254 |
ttctgtatttgttaattcaacagtatcagtgctgttttatcagttaaggttgcagattttggcagagtagtttatggtagcttcttcatgtgaaccttca |
6260353 |
T |
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| Q |
217 |
agcaattttccttctgttgtttgagtttcctggtatcagtccccaggttttggtgctgtatggatttattct |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6260354 |
agcaattttccttctgttgtttgagtttcctggtatcagtccccaggttttggtgctgtatggatttattct |
6260425 |
T |
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