View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438_low_2 (Length: 562)
Name: NF5438_low_2
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 263 - 552
Target Start/End: Original strand, 34385690 - 34385979
Alignment:
| Q |
263 |
ataggctttatgcttcagttgttaattgttatagaaaattcatgcaacaagttcactatattcaattttaacattggtttataacttacaagtcctgatg |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34385690 |
ataggctttatgcttcagttgttaattgttatagaaaattcatgcaacaagttcaatatattcaattttaacattggtttataacttacaagtcctgatg |
34385789 |
T |
|
| Q |
363 |
ataaaaaggctcagtagtttagtgcgtgtcttggtcagacattcaaaggataagcactagaagaaactaaggccggatgatcatcctcaatgcatcgacc |
462 |
Q |
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| T |
34385790 |
ataaaaaggctcagtagtttagtgcgtgtcttggtcagacattcaaaggataagcactagaagaaactaaggccggatgatcatcctcaatgcatcgacc |
34385889 |
T |
|
| Q |
463 |
aaagttatgatgcttcgtgctactgatgattcacctattcagctaccaattgaacaatatcagcactgcagttgctttctttgatgatgt |
552 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34385890 |
aaagttatgatgcttcatgctactgatgattcacctattcagctaccaattgaacaatatcagcactgcagttgctttctttgctgatgt |
34385979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 31 - 213
Target Start/End: Original strand, 34385455 - 34385637
Alignment:
| Q |
31 |
tcttgtgccctgaatgtacatagacttgtgcgttatattcagtgaatgaagttttaataannnnnnnnngcattagattggcagtcttattgtatatatg |
130 |
Q |
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| T |
34385455 |
tcttgtgccctgaatgtacatagacttgtgcgttatattcagtgaatgaagttttaataatttttttttgcattagattggccgtcttattgtatatatg |
34385554 |
T |
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| Q |
131 |
ccgccaataaaatactccataactaaatgtcaatctctggaatatagcagcaggcagcttatagtaagttgaacatcttaatc |
213 |
Q |
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| T |
34385555 |
ccgccgataaaatactccataactaaatgtcaatctctggaatatagcagcaggcagcttatagtaagttgaacatcttaatc |
34385637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 3e-74; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 265 - 507
Target Start/End: Complemental strand, 33098420 - 33098180
Alignment:
| Q |
265 |
aggctttatgcttcagttgttaattgttatagaaaattcatgcaacaagttcactatattcaattttaacattggtttataacttacaagtcctgatgat |
364 |
Q |
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||||||||||||||||||||||||| | || ||||| |||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| |
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| T |
33098420 |
aggctttatgcttcagttgttaattttcatggaaaagtcatgcaacaagttcaatgtattcaattttaacattggtttataa-------gtcctgatgat |
33098328 |
T |
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| Q |
365 |
aaaaaggctcagtagtttagtgc-----gtgtcttggtcagacattcaaaggataagcactagaagaaactaaggccggatgatcatcctcaatgcatcg |
459 |
Q |
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| T |
33098327 |
aaaaaggctcagtactttagtgctcattgtggcttggtcagacattcaaaggataagcactacaagaaaccaagaccagatgatcatcctcattgcatcg |
33098228 |
T |
|
| Q |
460 |
accaaagttatgatgcttcgtgctactgatgattcacctattcagcta |
507 |
Q |
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| T |
33098227 |
accaaagttatgatgcttcatgctactgataattcacctattcagcta |
33098180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 33098547 - 33098487
Alignment:
| Q |
100 |
gcattagattggcagtcttattgtatatatgccgccaataaaatactccataactaaatgt |
160 |
Q |
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| T |
33098547 |
gcattagattggcagtcttattgtatatttgccaccaataaaatactctgtaactaaatgt |
33098487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 4479446 - 4479394
Alignment:
| Q |
113 |
agtcttattgtatatatgccgccaataaaatactccataactaaatgtcaatct |
166 |
Q |
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| T |
4479446 |
agtcttattgtatatatgccaccaat-aaatactccgtaactaaatgtcaatct |
4479394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 4479480 - 4479444
Alignment:
| Q |
46 |
gtacatagacttgtgcgttatattcagtgaatgaagt |
82 |
Q |
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| T |
4479480 |
gtacatagacttgtgcattatattcagtgaatgaagt |
4479444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 9879242 - 9879169
Alignment:
| Q |
113 |
agtcttattgtatatatgccgccaataaaatactccataactaaatgtcaatctctggaatatagcagcaggca |
186 |
Q |
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| T |
9879242 |
agtcttattgtatatatgccaccaataaaatactccgcaactaaatgtcaatctctaaaatataatagcaggca |
9879169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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