View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438_low_25 (Length: 245)
Name: NF5438_low_25
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_low_25 |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 39953863 - 39953636
Alignment:
| Q |
18 |
aatatatggctgtaatcaatcattaacctatattatgaatgacttattgctcatgtcgtttgtatccattgacacactcattcaacccctttcaatctag |
117 |
Q |
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| T |
39953863 |
aatatatggttgtaatcaatcattaacctatattatgaatgacttattgctcatgtcgtttgtatccattgacacactcattcaacccctttcaatctag |
39953764 |
T |
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| Q |
118 |
caa---ggagtattatttcacttttcagttttttaatttaatgacaattggcaaaagaaaagtatagagtcactcaattcattcaattattatgaagaag |
214 |
Q |
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| T |
39953763 |
caatatggagtattatttcacttttcagttctttaatttaatgacaattgacaaaagaaaagtatagagtcactcaattcattcaattattat---gaag |
39953667 |
T |
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| Q |
215 |
ttctgagtaagtatatgcactgcttaaattc |
245 |
Q |
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| T |
39953666 |
ttctgagtaagtatatgcactgcttgaattc |
39953636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 91 - 245
Target Start/End: Original strand, 38598701 - 38598858
Alignment:
| Q |
91 |
acactcattcaacccctttcaatctagcaa---ggagtattatttcacttttcagttttttaatttaatgacaattggcaaaagaaaagtata------- |
180 |
Q |
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| T |
38598701 |
acactcattcaacccctttcaatctaacaatatggagtattatttcacttttcagtt-----ctttaatgacaattggcaaaagaaaagtatagcactat |
38598795 |
T |
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| Q |
181 |
-gagtcactcaattcattcaattattatgaagaagttctgagtaagtatatgcactgcttaaattc |
245 |
Q |
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| T |
38598796 |
tgagtcactcaattcattcaattgtt---aagaagttctgaggaagtatatgcactgcttgaattc |
38598858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 38867753 - 38867841
Alignment:
| Q |
91 |
acactcattcaacccctttcaatctagcaa---ggagtattatttcacttttcagttttttaatttaatgacaattggcaaaagaaaagtatag |
181 |
Q |
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| T |
38867753 |
acactcattcaacccctttcaatctagaaatatggagtatcattttacttttcagttttttaatt-----acaattggcaaaaggaaagaatag |
38867841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 38863852 - 38863886
Alignment:
| Q |
211 |
gaagttctgagtaagtatatgcactgcttaaattc |
245 |
Q |
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| T |
38863852 |
gaagttctgagtaagtatatgcactgcttgaattc |
38863886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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