View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5438_low_4 (Length: 492)

Name: NF5438_low_4
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5438_low_4
NF5438_low_4
[»] chr7 (2 HSPs)
chr7 (32-469)||(7165619-7166054)
chr7 (311-469)||(31822207-31822364)
[»] scaffold0311 (2 HSPs)
scaffold0311 (311-469)||(13467-13623)
scaffold0311 (309-427)||(15088-15203)
[»] chr4 (1 HSPs)
chr4 (311-469)||(27737837-27737994)
[»] chr6 (3 HSPs)
chr6 (400-469)||(20985916-20985985)
chr6 (411-463)||(8915528-8915580)
chr6 (322-376)||(30372040-30372093)
[»] chr2 (1 HSPs)
chr2 (432-469)||(18776818-18776855)
[»] chr3 (1 HSPs)
chr3 (392-429)||(36472548-36472585)


Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 32 - 469
Target Start/End: Complemental strand, 7166054 - 7165619
Alignment:
Q  32 ttttgttcacaaaaatagtcttattacaattgtaataagatataacttgaccaaaaaatagtccacgtgaccatagttatgttcatacatttaaagggtg 131  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   |    ||    
T  7166054 ttttgttcacaaaagtagtcttattacaattgtaataagataaaacttgaccaaaaaatagtccacgtgaccatagttatgttcatacatcgtat---tg 7165958  T
Q  132 aatatgcaatggttgggttcaaactctgaattccctatttatttattttaaaggatgaaattttagttactaa---gttacttgatnnnnnnnnnnnnct 228  Q
     |||||||| |||  |||| |||||||||||| |||||||||| |||||||| | |||| ||||||| |||||   ||||||||||            ||    
T  7165957 tatatgcaagggtcaggtttaaactctgaatttcctatttattcattttaaaaggtgaatttttagtcactaataagttacttgataaaaagaaaa--ct 7165860  T
Q  229 taaacttgtgtatttcataagagcaagtttccaatgacctctacctcttacacacatttcaagattgatattgtatggtttttgttgagtatttgagaat 328  Q
    ||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  7165859 taaccctgtgtatttcataagagcaagtttccaatgacctccacctcttacacacatttcaagattgatattgtatgatttttgttgagtaattgagaat 7165760  T
Q  329 tcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattatcaagagaaatattttgattaaaagatagaaaatgagtacatactagt 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  7165759 tcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattaacaagagaaatattttgatcaaaagatagaaaatgagtacatactagt 7165660  T
Q  429 ccatatttataggacttattggactaaccaattgtgtaact 469  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7165659 ccatatttataggacttattggactaaccaattgtgtaact 7165619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 311 - 469
Target Start/End: Original strand, 31822207 - 31822364
Alignment:
Q  311 tgttgagtatttgagaattcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattatca-agagaaatattttgattaaaagatag 409  Q
    |||||||| | |||||||| |||||||||| |  ||||||||||| || | ||||||| ||||||||  |||| ||| ||| |||||||| |||||||||    
T  31822207 tgttgagtttatgagaatttggagaattag-agccaaaagagccataatggtttgattgagaaaagaa-atcatagaaaaacattttgatcaaaagatag 31822304  T
Q  410 aaaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaact 469  Q
    |||||||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||    
T  31822305 aaaatgagtacatacttgtccatatttataggactaatcagactaaccaattgtgtaact 31822364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 311 - 469
Target Start/End: Complemental strand, 13623 - 13467
Alignment:
Q  311 tgttgagtatttgagaattcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattatcaagagaaatattttgattaaaagataga 410  Q
    ||||||||| ||| |||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||   |||||||||||||||| ||||||||||    
T  13623 tgttgagtaattgcgaattcggagaattagaaacaaaaagagccaaaaggctttgattgagaaaagattac--agagaaatattttgatcaaaagataga 13526  T
Q  411 aaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaact 469  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  13525 aaatgagtacatactagtccatatttataggactaattagactaaccaattgtgtaact 13467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 309 - 427
Target Start/End: Complemental strand, 15203 - 15088
Alignment:
Q  309 tttgttgagtatttgagaattcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattatcaagagaaatattttgattaaaagata 408  Q
    ||||||||||| |||||||||||||||||||| ||  ||||||||||||||||||||||| | |||||||||   |||||||||||||||| ||||||||    
T  15203 tttgttgagtaattgagaattcggagaattagaaacaaaaagagccaaaaggctttgattga-aaaagatta--cagagaaatattttgatcaaaagata 15107  T
Q  409 gaaaatgagtacatactag 427  Q
    |||||||||||||||||||    
T  15106 gaaaatgagtacatactag 15088  T

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Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 311 - 469
Target Start/End: Complemental strand, 27737994 - 27737837
Alignment:
Q  311 tgttgagtatttgagaattcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattatca-agagaaatattttgattaaaagatag 409  Q
    |||||||| |||||||||| |||||||||| |  ||| ||||||| |||||||||||| |||||||   |||  ||| ||| |||||||| |||||||||    
T  27737994 tgttgagtttttgagaatttggagaattag-agccaatagagccataaggctttgattgagaaaagga-atcgtagaaaaacattttgatcaaaagatag 27737897  T
Q  410 aaaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaact 469  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27737896 aaaatgagtacatactagtccttatttataggacttattggactaaccaattgtgtaact 27737837  T

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Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 400 - 469
Target Start/End: Original strand, 20985916 - 20985985
Alignment:
Q  400 taaaagatagaaaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaact 469  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||    
T  20985916 taaaagatagcaaatgagtacatactagtccatatttataggacttaatggactaacaaactgtgtaact 20985985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 411 - 463
Target Start/End: Complemental strand, 8915580 - 8915528
Alignment:
Q  411 aaatgagtacatactagtccatatttataggacttattggactaaccaattgt 463  Q
    ||||||||||||| |||||| ||||||||||||||| ||||||||||||||||    
T  8915580 aaatgagtacataatagtccttatttataggacttaatggactaaccaattgt 8915528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 376
Target Start/End: Complemental strand, 30372093 - 30372040
Alignment:
Q  322 tgagaattcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaag 376  Q
    ||||||||  ||||||| |||||||||||||||| |||||||||||| |||||||    
T  30372093 tgagaatttagagaatt-ggaaacaaaagagccataaggctttgattgagaaaag 30372040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 469
Target Start/End: Complemental strand, 18776855 - 18776818
Alignment:
Q  432 tatttataggacttattggactaaccaattgtgtaact 469  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  18776855 tatttataggacttaatggactaaccaattgtgtaact 18776818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 36472585 - 36472548
Alignment:
Q  392 attttgattaaaagatagaaaatgagtacatactagtc 429  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  36472585 attttgatcaaaagatggaaaatgagtacatactagtc 36472548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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