View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5438_low_8 (Length: 416)

Name: NF5438_low_8
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5438_low_8
NF5438_low_8
[»] chr7 (10 HSPs)
chr7 (1-400)||(22922151-22922550)
chr7 (1-384)||(22933038-22933424)
chr7 (260-322)||(22880631-22880693)
chr7 (260-342)||(22815074-22815156)
chr7 (260-336)||(22858515-22858591)
chr7 (260-342)||(22889339-22889421)
chr7 (262-342)||(22885641-22885721)
chr7 (260-342)||(22831078-22831160)
chr7 (301-342)||(22840099-22840140)
chr7 (301-342)||(22893991-22894032)
[»] chr2 (1 HSPs)
chr2 (1-130)||(24382593-24382722)
[»] chr5 (1 HSPs)
chr5 (86-339)||(15628296-15628549)
[»] chr1 (2 HSPs)
chr1 (1-121)||(36386057-36386177)
chr1 (260-342)||(21150585-21150667)
[»] chr3 (1 HSPs)
chr3 (15-121)||(44021745-44021852)


Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 22922550 - 22922151
Alignment:
Q  1 aaatggtataataagattaacaaatgaaacaagtagattattgggtcatgctttttatcctcaaccatttcagataaagaacaaaacaactggtaaagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22922550 aaatggtataataagattaacaaatgaaacaagtagattattgggtcatgctttttatcctcaaccatttcagataaagaacaaaactactggtaaagtt 22922451  T
Q  101 ttctctttttcatcatcttttgcacttgcttgtgttcctgaatatcctaaacttggtggccatggcatggcttttactatagtcccttcaaaagatctca 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22922450 ttctctttctcatcatcttttgcacttgcttgtgttcctgaatatcctaaacttggtggccatggcatggcttttactatagtcccttcaaaagatctca 22922351  T
Q  201 aagccttacctagtcaatatcttggtcttctgaattcaagtgatgttggtaatttctctaaccatctttttgctgttgagtttgacactgttcaagattt 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22922350 aagctttacctagtcaatatcttggtcttctgaattcaagtgatgttggtaatttctctaaccatctttttgctgttgagtttgacactgttcaagattt 22922251  T
Q  301 tgagtttggtgatattaatgataaccatgttggtatagatattaatagtatgcgttcaaatgcaactattactgctggttattatagtgatgatgatatg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22922250 tgagtttggtgatattaatgataaccatgttggtatagatattaatagtatgcgttcaaatgcaactattactgctggttattatagtgatgatgatatg 22922151  T

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Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 22933038 - 22933424
Alignment:
Q  1 aaatggtataataagattaacaaatgaaacaagtagattattgggtcatgctttttatcctcaaccatttcagataaagaacaaaacaactggtaaagtt 100  Q
    |||||| ||||||||||||||||||||  |||| | |||| |||| |||||||||||  ||||||| |||||| ||||||||  |||||||||||||| |    
T  22933038 aaatggaataataagattaacaaatgattcaagcaaattaatgggccatgctttttactctcaaccttttcagctaaagaactcaacaactggtaaagct 22933137  T
Q  101 ttctctttttcatcatcttttgcacttgcttgtgttcctgaatatcctaaacttggtggccatggcatggcttttactatagtcccttcaaaagatctca 200  Q
    || || ||||||||| | |||||  |||||  ||||||||| ||||||| | ||||||| |||||||||||||| || ||||  ||| | || |||||||    
T  22933138 ttttccttttcatcaacctttgctattgctgttgttcctgagtatcctagagttggtggtcatggcatggctttcacaatagcacctactaaggatctca 22933237  T
Q  201 aagccttacctagtcaatatcttggtcttctgaattcaagtgatgtt---ggtaatttctctaaccatctttttgctgttgagtttgacactgttcaaga 297  Q
    | || ||||||| |||||||||||||||| | ||| ||||  |||||   |||||||||||||||||| |||||||||| ||||||||||||| ||||||    
T  22933238 atgctttacctattcaatatcttggtcttttcaatgcaagcaatgtttttggtaatttctctaaccatatttttgctgtcgagtttgacactgctcaaga 22933337  T
Q  298 ttttgagtttggtgatattaatgataaccatgttggtatagatattaatagtatgcgttcaaatgcaactattactgctggttatta 384  Q
     |||||||||| |||||||||||||||||||||||||||||| || |||||| || | ||||||||  || ||||||||||||||||    
T  22933338 ctttgagtttgatgatattaatgataaccatgttggtatagacatcaatagtttgaggtcaaatgcttctgttactgctggttatta 22933424  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 22880693 - 22880631
Alignment:
Q  260 aaccatctttttgctgttgagtttgacactgttcaagattttgagtttggtgatattaatgat 322  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  22880693 aaccatgtttttgctgttgagtttgacactgttcaagattttgagtttgacgatatcaatgat 22880631  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 22815156 - 22815074
Alignment:
Q  260 aaccatctttttgctgttgagtttgacactgttcaagattttgagtttggtgatattaatgataaccatgttggtatagatat 342  Q
    |||||| |||||| ||||||| ||||||||  |||||||||  |||||| |||||| |||||||||||||||||||| |||||    
T  22815156 aaccatgtttttggtgttgagcttgacactcgtcaagatttgcagtttgatgatatcaatgataaccatgttggtatcgatat 22815074  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 336
Target Start/End: Complemental strand, 22858591 - 22858515
Alignment:
Q  260 aaccatctttttgctgttgagtttgacactgttcaagattttgagtttggtgatattaatgataaccatgttggtat 336  Q
    |||||| | |||||||||||| |||||||| |||||||| ||||||||| |||||| ||| ||||||||| ||||||    
T  22858591 aaccatgtgtttgctgttgagcttgacactattcaagatcttgagtttgatgatatcaataataaccatgctggtat 22858515  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 22889421 - 22889339
Alignment:
Q  260 aaccatctttttgctgttgagtttgacactgttcaagattttgagtttggtgatattaatgataaccatgttggtatagatat 342  Q
    |||||| |||||| ||||||| ||||||||  |||| |||||||||||| |||||| || |||||||||||||| || |||||    
T  22889421 aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaacgataaccatgttggaattgatat 22889339  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 342
Target Start/End: Complemental strand, 22885721 - 22885641
Alignment:
Q  262 ccatctttttgctgttgagtttgacactgttcaagattttgagtttggtgatattaatgataaccatgttggtatagatat 342  Q
    |||| |||||| | ||||| ||||||||| |||| |||||||||||| ||| || |||||||||||| ||||||| |||||    
T  22885721 ccatgtttttggtattgagcttgacactgatcaaaattttgagtttgatgaaatcaatgataaccatattggtattgatat 22885641  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 22831160 - 22831078
Alignment:
Q  260 aaccatctttttgctgttgagtttgacactgttcaagattttgagtttggtgatattaatgataaccatgttggtatagatat 342  Q
    |||||| |||||| ||||||| ||||||||  | || |||||||||||| |||||| |||||||| |||||||| || |||||    
T  22831160 aaccatgtttttggtgttgagcttgacactcgtaaaaattttgagtttgatgatatcaatgataatcatgttggaattgatat 22831078  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 22840140 - 22840099
Alignment:
Q  301 tgagtttggtgatattaatgataaccatgttggtatagatat 342  Q
    |||||||| |||||| |||||||||||||||||||| |||||    
T  22840140 tgagtttgatgatatcaatgataaccatgttggtattgatat 22840099  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 22894032 - 22893991
Alignment:
Q  301 tgagtttggtgatattaatgataaccatgttggtatagatat 342  Q
    |||||||| |||||| |||||||||||||||||||| |||||    
T  22894032 tgagtttgatgatatcaatgataaccatgttggtattgatat 22893991  T

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Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 24382722 - 24382593
Alignment:
Q  1 aaatggtataataagattaacaaatgaaacaagtagattattgggtcatgctttttatcctcaaccatttcagataaagaacaaaacaactggtaaagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| |||| ||||||||||||||  ||||||||    
T  24382722 aaatggtataataagattaacaaatgaaacaagtagattaatggttcatgctttttatcctctaccattttagatgaagaacaaaacaaccagtaaagtt 24382623  T
Q  101 ttctctttttcatcatcttttgcacttgct 130  Q
    || |||||||| ||||||||||| ||||||    
T  24382622 ttatctttttcttcatcttttgctcttgct 24382593  T

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Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 86 - 339
Target Start/End: Complemental strand, 15628549 - 15628296
Alignment:
Q  86 acaactggtaaagttttctctttttcatcatcttttgcacttgcttgtgttcctgaatatcctaaacttggtggccatggcatggcttttactatagtcc 185  Q
    |||||| |||||| || ||| ||||| ||||||||||| ||||||  ||| ||||| ||||||||  | ||||| |||||||||||||| || ||||       
T  15628549 acaactcgtaaagcttactcattttcttcatcttttgctcttgctgttgtccctgagtatcctaatataggtggtcatggcatggctttcacaatagcaa 15628450  T
Q  186 cttcaaaagatctcaaagccttacctagtcaatatcttggtcttctgaattcaagtgatgttggtaatttctctaaccatctttttgctgttgagtttga 285  Q
    || | || |||||| |||  |  |||  ||| |||||||||||| | ||||| ||| ||||||||||||| || |||||||||||||||||||| |||||    
T  15628449 ctactaaggatctcgaaggttcgcctcttcagtatcttggtcttttcaattcgagtaatgttggtaatttttcgaaccatctttttgctgttgaatttga 15628350  T
Q  286 cactgttcaagattttgagtttggtgatattaatgataaccatgttggtataga 339  Q
    ||||||   ||| |||| ||||| ||||||||||||||||||||||||||||||    
T  15628349 cactgtcttagactttgggtttgatgatattaatgataaccatgttggtataga 15628296  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 36386057 - 36386177
Alignment:
Q  1 aaatggtataataagattaacaaatgaaacaagtagattattgggtcatgctttttatcctcaaccatttcagataaagaacaaaacaactggtaaagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| |||| |||| |||||||||  ||||||||    
T  36386057 aaatggtataataagattaacaaatgaaacaagtagattaatggttcatgctttttatcctctaccattttagatgaagatcaaaacaaccagtaaagtt 36386156  T
Q  101 ttctctttttcatcatctttt 121  Q
    || |||||| | |||||||||    
T  36386157 ttatcttttccttcatctttt 36386177  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 21150585 - 21150667
Alignment:
Q  260 aaccatctttttgctgttgagtttgacactgttcaagattttgagtttggtgatattaatgataaccatgttggtatagatat 342  Q
    |||||| |||||| ||||||| ||||||||||||||||||||||||||| |||||| ||| |||||||||||||||| |||||    
T  21150585 aaccatgtttttggtgttgagcttgacactgttcaagattttgagtttgatgatatcaataataaccatgttggtattgatat 21150667  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 44021745 - 44021852
Alignment:
Q  15 gattaacaaatgaaacaagtagattattgggtcatgctttttatcctcaaccatttcagataaagaacaaaacaa-ctggtaaagttttctctttttcat 113  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| | |  ||||||||||||||||| |    
T  44021745 gattaacaaatgagacaagtagattaatgggtcatgctttttatcctctaccatttcagataaagaacaaaacaagcagtaaaagttttctctttttctt 44021844  T
Q  114 catctttt 121  Q
    ||||||||    
T  44021845 catctttt 44021852  T

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