View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438_low_9 (Length: 394)
Name: NF5438_low_9
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 7e-59; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 6413367 - 6413244
Alignment:
| Q |
12 |
aaaggacatagaaacaatagacaaaataacattgaatatacttgtatcaaaacatgaaaccagtaactatcaaaagaatgaagatcaccaagcatttaac |
111 |
Q |
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| T |
6413367 |
aaaggacatagaaacaatagacaaaataacattgaatatacttgtatcaaaacatgaaaccagtaactatcaaaagaatgaaaatcaccaagcatttaac |
6413268 |
T |
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| Q |
112 |
taacaaaacttatccatcgctcat |
135 |
Q |
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| T |
6413267 |
taacaaaacttattcatcgctcat |
6413244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 275 - 379
Target Start/End: Original strand, 6399398 - 6399502
Alignment:
| Q |
275 |
tatgataacttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcaacccctttcaccatt |
374 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6399398 |
tatgataacttaggcacatttcttgccattcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcactatcaacccctttcaccatt |
6399497 |
T |
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| Q |
375 |
ttctt |
379 |
Q |
| |
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||||| |
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| T |
6399498 |
ttctt |
6399502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 275 - 379
Target Start/End: Complemental strand, 6413104 - 6413000
Alignment:
| Q |
275 |
tatgataacttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcaacccctttcaccatt |
374 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6413104 |
tatgataacttaggcacatttcttgccattcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcactatcaacccctttcaccatt |
6413005 |
T |
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| Q |
375 |
ttctt |
379 |
Q |
| |
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||||| |
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| T |
6413004 |
ttctt |
6413000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 275 - 379
Target Start/End: Complemental strand, 6410358 - 6410254
Alignment:
| Q |
275 |
tatgataacttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcaacccctttcaccatt |
374 |
Q |
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|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
6410358 |
tatgatgacttaggcacatttcttgccattcatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcgacacctttcaccatt |
6410259 |
T |
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| Q |
375 |
ttctt |
379 |
Q |
| |
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||||| |
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| T |
6410258 |
ttctt |
6410254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 282 - 369
Target Start/End: Original strand, 6402920 - 6403007
Alignment:
| Q |
282 |
acttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcaacccctttca |
369 |
Q |
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|||||| |||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
6402920 |
acttagacacatttcttgccactcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcaccatcgacacctttca |
6403007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 6410564 - 6410461
Alignment:
| Q |
31 |
gacaaaataacattgaatatacttgtatcaaaacatgaaaccagtaactatcaaaagaatgaagatcaccaagcatttaactaacaaaacttatccatcg |
130 |
Q |
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|||| |||||||||||||||| ||||||||||||| ||||| |||||||||| |||||||||| ||||||||||||||||| || |||| |||| |||| |
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| T |
6410564 |
gacagaataacattgaatatatttgtatcaaaacaagaaacgagtaactatc-aaagaatgaaaatcaccaagcatttaaccaaaaaaatttattcatca |
6410466 |
T |
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| Q |
131 |
ctcat |
135 |
Q |
| |
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||||| |
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| T |
6410465 |
ctcat |
6410461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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