View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5439-Insertion-3 (Length: 790)
Name: NF5439-Insertion-3
Description: NF5439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5439-Insertion-3 |
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| [»] scaffold0064 (2 HSPs) |
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| [»] scaffold0115 (1 HSPs) |
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Alignment Details
Target: scaffold0064 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 8 - 526
Target Start/End: Complemental strand, 55434 - 54913
Alignment:
| Q |
8 |
tttttatgccggaaataaatggccggcgaataaccaagagattctcctcttggttttgagagtaagtaagattgttataaaaaacatagtaattggaaat |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
55434 |
tttttatgccggaaataaatggccggcgaataaccaagagattctcctcttggttttgagagtaaataagattgttataaaaaacatagtaattggaaat |
55335 |
T |
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| Q |
108 |
aaaatgaggatcagttatgaaattgaaccaggatttgcaaacaaacttgcatttcaacaattctcttgatggcaaccttgatagaatgttggatacaact |
207 |
Q |
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| T |
55334 |
aaaatgaggatcagttatgaaattgaaccaggatttgcaaacaaacttgcatttcaacaattctcttgatggcaaccttgatagaatgttggatactact |
55235 |
T |
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| Q |
208 |
tcttgtggtaaatgctctatctttgtaactatgatcttcgacttggatctttgaactctgctcaatgctaatttggaataaagaactttcttcacgaaaa |
307 |
Q |
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| T |
55234 |
tcttgtggtaaatgctccatctttgtaactatgatcttcgacttggatctttgaactctgctcaatgctaatttggaataaagaactttcttcacgaaaa |
55135 |
T |
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| Q |
308 |
atagaagaacgnnnnnnnnnnnnnnnncaaacatgattgtaaaattggtatgttttctatg----tgtatatggatgttattgaggagtggacatgatct |
403 |
Q |
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| T |
55134 |
atagaagaaagaaaaaaaagcaaaaaacaaacatgattttaaaaatggtatattatctatgtatttgtatatggatttgattgaggagtgggcatgatct |
55035 |
T |
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| Q |
404 |
tgtgcttggaaaccatttagttttcagatacctttataatcgtgtgcctagtggtttcatcttggtttccacattcacattcacaagtcacatggtagat |
503 |
Q |
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| T |
55034 |
tgtgcttggaaaccatgaag-tttcagatgcctttataatcgtgtacctagtggtttcatcttggtttccacattcacattcacaagtcacatggtagat |
54936 |
T |
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| Q |
504 |
tccttcataaaaaagtcacaagg |
526 |
Q |
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| T |
54935 |
tccttcataaaaaagtcacaagg |
54913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 553 - 790
Target Start/End: Complemental strand, 54886 - 54653
Alignment:
| Q |
553 |
cgaacaatatattaaagtaacgttgattttagacatattgaagtcatgtcatatatatttaaaaataccatgagctgtttcttcnnnnnnnnnnnnnnnn |
652 |
Q |
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| T |
54886 |
cgaaccatatattaaagtaacgttgattttagacatattgaagtcatgtcatatatatttaaaaataccatgagctgtttctt-aaaaaaaaaacaaaaa |
54788 |
T |
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| Q |
653 |
ntactatgagctgtacttagtagaacgtggttggaaccattatgagtagtaggtacannnnnnnnnnnnnnnnnnnnngtctatttcttgtatcaactct |
752 |
Q |
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| T |
54787 |
ataccatgagctgtacttagtagaacgtggttggaaccattatg---agtaggtacaatttcattttgttttttatttgtctatttcttgtatcaactct |
54691 |
T |
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| Q |
753 |
catgaggatttttcaaggcttaaatgcacttttggttc |
790 |
Q |
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| T |
54690 |
cataaggatttttcaaggcttaaatgcacttttggttc |
54653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 15855 - 15728
Alignment:
| Q |
93 |
atagtaattggaaataaaatgaggatcagttatgaaattgaaccaggatttgcaaacaaacttgcatttcaacaattctcttgatggcaaccttgataga |
192 |
Q |
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| T |
15855 |
atagtaattggttgtaaaatgaggatcagctatgagatgcaaccatgatttgcaaacacacttgcatttcaacaactttcttgcaggcaaccttgagagg |
15756 |
T |
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| Q |
193 |
atgttggatacaacttcttgtggtaaat |
220 |
Q |
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| T |
15755 |
atgttggataccaattcttgtggcaaat |
15728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 21087378 - 21087265
Alignment:
| Q |
107 |
taaaatgaggatcagttatgaaattgaaccaggatttgcaaacaaacttgcatttcaacaattctcttgatggcaaccttgatagaatgttggatacaac |
206 |
Q |
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||||||||| ||||||||||| |||| |||| | ||||||||||| |||| ||||||||| |||||||| || |||||||| |||||||| ||||| | |
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| T |
21087378 |
taaaatgagaatcagttatgagattgtaccaagttttgcaaacaagcttgtttttcaacaactctcttgaaggtaaccttgagagaatgtttgataccaa |
21087279 |
T |
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| Q |
207 |
ttcttgtggtaaat |
220 |
Q |
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| T |
21087278 |
ttcatgtggtaaat |
21087265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 215
Target Start/End: Complemental strand, 26813041 - 26812916
Alignment:
| Q |
90 |
aacatagtaattggaaataaaatgaggatcagttatgaaattgaaccaggatttgcaaacaaacttgcatttcaacaattctcttgatggcaaccttgat |
189 |
Q |
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|||||||| ||||| |||||||||||||| ||| ||| || ||||| | ||||||||| |||||||||| | |||||| | | || |||||||| |
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| T |
26813041 |
aacatagtgattggtaataaaatgaggattggttgtgagatctaaccatggcttgcaaacacacttgcattttgataattctttagctgacaaccttgtg |
26812942 |
T |
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| Q |
190 |
agaatgttggatacaacttcttgtgg |
215 |
Q |
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|| ||||||||||| | ||||||||| |
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| T |
26812941 |
aggatgttggataccaattcttgtgg |
26812916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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