View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5439-Insertion-4 (Length: 686)
Name: NF5439-Insertion-4
Description: NF5439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5439-Insertion-4 |
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| [»] scaffold0237 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0237 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: scaffold0237
Description:
Target: scaffold0237; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 143 - 471
Target Start/End: Original strand, 1238 - 1576
Alignment:
| Q |
143 |
atgtcactttatattatttgtgaaaatttaaaattatttcgcgtcgcaacatgcgtcgtagcagctgcaacaatttaaaacatgataagaagaaaaagca |
242 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1238 |
atgtcactttatgttatttgtgaaaatttaaaattattttgcgtcgcaacatgcgtcgtagcagctgcaacaatttaaaacatgataagaagaaaaaaca |
1337 |
T |
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| Q |
243 |
atagtagagtgggtacccaagtttgaaatgatagccaaacaagttagcagtttgaaagcttgagtttaacttttcatctaattttatataaacaaattac |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1338 |
atagtagagtgggtacccaagtttgaaatgatagccaaacaagttagcagtttgaaagcttgagtttaacttttcatctaattttatataaacaaattac |
1437 |
T |
|
| Q |
343 |
gtttaacttttttagtttatttgtaattgcatttttaaaatcaaattgtaaact----------taatctacaaataaaagtatgtacttcaatttcaaa |
432 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1438 |
gtttaacttttttagtttatttataattgcatttttaaaatcaaattgtaaacttaatctacaataatctacaaataaaagtatgtacttcaatttcaaa |
1537 |
T |
|
| Q |
433 |
aagaatatagaaattcgaaactattacattctcgtagtt |
471 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
1538 |
aagaatatggaaattcgaaactattacattctcgtagtt |
1576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 1066 - 1201
Alignment:
| Q |
7 |
agaaatcacatcagatgatttcaaccatgttctttcaaatctttccataagaaattaaaattccggaactccaaattccaatatgatttagagattatga |
106 |
Q |
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| T |
1066 |
agaaatcacatcagatgatttcaaccatgttctttcaaatctttccataagaaattaaaattccggaactccaaattccaatatgatttagagattatga |
1165 |
T |
|
| Q |
107 |
atatacatacctttattgaagaaaagaaatcaaact |
142 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
1166 |
atatacatacctttattgaagaaaagaaatcaaact |
1201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 540 - 686
Target Start/End: Original strand, 1645 - 1793
Alignment:
| Q |
540 |
cttttgatgcttaaaaacat--aagtttgataaaattgcgagtaaatagacactttaatctttgactcagaaccttgttatcacaaaattctttaactca |
637 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| |||||||||||||| | | |||||||| ||| |||||| |
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| T |
1645 |
cttttgatgcttaaaaaaaataaagtttgataaaattgcgagtaaatagtcactttaatccttgactcagaacctcgctgtcacaaaagtctctaactcg |
1744 |
T |
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| Q |
638 |
tgaataaatacaaagtaatcctgaatttgcacttccgttatcagtttag |
686 |
Q |
| |
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|||||||||||||||| |||| || |||||||| ||||||||||||| |
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| T |
1745 |
ggaataaatacaaagtagtcctaaacgtgcacttctgttatcagtttag |
1793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 143 - 471
Target Start/End: Original strand, 29845034 - 29845372
Alignment:
| Q |
143 |
atgtcactttatattatttgtgaaaatttaaaattatttcgcgtcgcaacatgcgtcgtagcagctgcaacaatttaaaacatgataagaagaaaaagca |
242 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29845034 |
atgtcactttatgttatttgtgaaaatttaaaattattttgcgtcgcaacatgcgtcgtagcagctgcaacaatttaaaacatgataagaagaaaaaaca |
29845133 |
T |
|
| Q |
243 |
atagtagagtgggtacccaagtttgaaatgatagccaaacaagttagcagtttgaaagcttgagtttaacttttcatctaattttatataaacaaattac |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29845134 |
atagtagagtgggtacccaagtttgaaatgatagccaaacaagttagcagtttgaaagcttgagtttaacttttcatctaattttatataaacaaattac |
29845233 |
T |
|
| Q |
343 |
gtttaacttttttagtttatttgtaattgcatttttaaaatcaaattgtaaact----------taatctacaaataaaagtatgtacttcaatttcaaa |
432 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29845234 |
gtttaacttttttagtttatttataattgcatttttaaaatcaaattgtaaacttaatctacaataatctacaaataaaagtatgtacttcaatttcaaa |
29845333 |
T |
|
| Q |
433 |
aagaatatagaaattcgaaactattacattctcgtagtt |
471 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
29845334 |
aagaatatggaaattcgaaactattacattctcgtagtt |
29845372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 29844862 - 29844997
Alignment:
| Q |
7 |
agaaatcacatcagatgatttcaaccatgttctttcaaatctttccataagaaattaaaattccggaactccaaattccaatatgatttagagattatga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29844862 |
agaaatcacatcagatgatttcaaccatgttctttcaaatctttccataagaaattaaaattccggaactccaaattccaatatgatttagagattatga |
29844961 |
T |
|
| Q |
107 |
atatacatacctttattgaagaaaagaaatcaaact |
142 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
29844962 |
atatacatacctttattgaagaaaagaaatcaaact |
29844997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 540 - 686
Target Start/End: Original strand, 29845441 - 29845588
Alignment:
| Q |
540 |
cttttgatgcttaaaaaca-taagtttgataaaattgcgagtaaatagacactttaatctttgactcagaaccttgttatcacaaaattctttaactcat |
638 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||| |||||||||||||| | | |||||||| ||| |||||| |
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| T |
29845441 |
cttttgatgcttaaaaaaaataagtttgataaaattgcgagtaaatagtcactttaatccttgactcagaacctcgctgtcacaaaagtctctaactcgg |
29845540 |
T |
|
| Q |
639 |
gaataaatacaaagtaatcctgaatttgcacttccgttatcagtttag |
686 |
Q |
| |
|
|||||||||||||||| |||| || |||||||| ||||||||||||| |
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| T |
29845541 |
gaataaatacaaagtagtcctaaacgtgcacttctgttatcagtttag |
29845588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 157 - 291
Target Start/End: Complemental strand, 29826464 - 29826326
Alignment:
| Q |
157 |
tatttgtgaaaatttaaaattatttcgcgtcgcaacatgcgtcgtagcagctgcaacaatttaaaacatgataagaagaaaaagcaatag----tagagt |
252 |
Q |
| |
|
||||||| | |||||||||||||||| |||| ||||||| |||||||||||||||||| ||||||| |||||||||| ||| | | ||| ||||| |
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| T |
29826464 |
tatttgttacaatttaaaattatttcacgtcacaacatgtgtcgtagcagctgcaacagtttaaaatatgataagaaaaaacaagagtagaatcaagagt |
29826365 |
T |
|
| Q |
253 |
gggtacccaagtttgaaatgatagccaaacaagttagca |
291 |
Q |
| |
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||||||||||||||||||||||| ||| |||||||||| |
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| T |
29826364 |
gggtacccaagtttgaaatgatatccagccaagttagca |
29826326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 397 - 457
Target Start/End: Complemental strand, 29212617 - 29212558
Alignment:
| Q |
397 |
taatctacaaataaaagtatgtacttcaatttcaaaaagaatatagaaattcgaaactatt |
457 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||| |||||| || ||||| |
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|
| T |
29212617 |
taatctacaaataaaagtgt-tacttcaatttcaaaaagaatataaaaattcaaacctatt |
29212558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 405 - 448
Target Start/End: Complemental strand, 24268723 - 24268680
Alignment:
| Q |
405 |
aaataaaagtatgtacttcaatttcaaaaagaatatagaaattc |
448 |
Q |
| |
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|||||||||| ||| ||||||||||||||||||| ||||||||| |
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| T |
24268723 |
aaataaaagtttgtgcttcaatttcaaaaagaatgtagaaattc |
24268680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 329
Target Start/End: Original strand, 29902110 - 29902141
Alignment:
| Q |
298 |
aagcttgagtttaacttttcatctaattttat |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
29902110 |
aagcttgagtttaacttttcatctaattttat |
29902141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 32520151 - 32520200
Alignment:
| Q |
144 |
tgtcactttatattatttgtgaaaatttaaaattatttcgcgtcgcaaca |
193 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| || ||||||| |
|
|
| T |
32520151 |
tgtcactttatatagtttgtgaaaatttaaaattatttcacgccgcaaca |
32520200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 633 - 686
Target Start/End: Original strand, 28524812 - 28524866
Alignment:
| Q |
633 |
actcatgaataaatacaaagtaatcct-gaatttgcacttccgttatcagtttag |
686 |
Q |
| |
|
||||| || |||||||||||||||||| |||| |||||||||||||||| ||||| |
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| T |
28524812 |
actcaggattaaatacaaagtaatccttgaatgtgcacttccgttatcattttag |
28524866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 686
Target Start/End: Complemental strand, 2677892 - 2677801
Alignment:
| Q |
596 |
tctttgactcagaaccttgttatcacaaaattctttaactcatgaataaatacaaagtaat-cctgaatttgcacttccgttatcagtttag |
686 |
Q |
| |
|
|||||||||| | |||| ||| ||||||| ||| | |||||||| ||||||||||||| | ||| ||| ||||||| |||||||||||||| |
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|
| T |
2677892 |
tctttgactctgtacctcgttgtcacaaaggtctatgactcatgattaaatacaaagtattccctaaatgtgcactttcgttatcagtttag |
2677801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 33492641 - 33492685
Alignment:
| Q |
149 |
ctttatattatttgtgaaaatttaaaattatttcgcgtcgcaaca |
193 |
Q |
| |
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|||||||| |||||||||||||||||||||||| || ||||||| |
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| T |
33492641 |
ctttatatagtttgtgaaaatttaaaattatttcacggcgcaaca |
33492685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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