View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5439-Insertion-5 (Length: 440)
Name: NF5439-Insertion-5
Description: NF5439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5439-Insertion-5 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 440
Target Start/End: Original strand, 29230021 - 29230453
Alignment:
| Q |
8 |
gatgtggctagggaaacccttaattctcttagaaatgccaatgaagccacaaattgggtcaatagatatgtgaaaccctatgctcgagatgttaaaatca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29230021 |
gatgtggctagggaaacccttaattctcttagaaatgccaatgaagccacaaattgggtcaatagatatgtgaaaccctatgctcgagatgttaaaatca |
29230120 |
T |
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| Q |
108 |
agtacatcactgtcggaaatgaaattaaaccttatgacagtgaagcacaatccattctccctgccatgcaaaacattcaaaatgctatttcagcagccaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29230121 |
agtacatcactgtcggaaatgaaattaaaccttacgacagtgaagcacaatccattctccctgccatgcaaaacattcaaaatgctatttcagcagccaa |
29230220 |
T |
|
| Q |
208 |
tttacagggacaaatcaaggtctcaatagcaattgacatgactttgattggtaattcatatccacccaataatggtgttttcactgaccaagcaaaacca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29230221 |
tttacagggacaaatcaaggtctcaatagcaattgacatgactttgattggtaattcatatccacccaataatggtgttttcactgaccaagcaaaacca |
29230320 |
T |
|
| Q |
308 |
tacatacaaccaataataaacttcctaaagaacaatggagcaccacttcttgccaatgtgtatccatacttcgcttatatcaataataaacaaagcattt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29230321 |
tacatacaaccaataataaacttcctaaagaacaatggagcaccacttcttgccaatgtgtatccgtacttcgcttatatcaataataaacaaagcattt |
29230420 |
T |
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| Q |
408 |
ctcttgattatgctctttttagacaacaaggaa |
440 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
29230421 |
ctcttgattatgctctttttagacaacaaggaa |
29230453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 440
Target Start/End: Original strand, 29225357 - 29225789
Alignment:
| Q |
8 |
gatgtggctagggaaacccttaattctcttagaaatgccaatgaagccacaaattgggtcaatagatatgtgaaaccctatgctcgagatgttaaaatca |
107 |
Q |
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|||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||| ||||||||||| | |||| ||||||| |
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| T |
29225357 |
gatgtggctaaggaaacccttccttctcttagaaatgcaaatgaagccacaaattgggtcaacaaatatgtgagaccctatgctcaaaatgtaaaaatca |
29225456 |
T |
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| Q |
108 |
agtacatcactgtcggaaatgaaattaaaccttatgacagtgaagcacaatccattctccctgccatgcaaaacattcaaaatgctatttcagcagccaa |
207 |
Q |
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||||||||| ||| |||||||||||||||||| |||||| ||| || |||| ||||||||||||||||||||||||||||||||| |||||| | || || |
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| T |
29225457 |
agtacatcagtgttggaaatgaaattaaacctaatgacaatgaggcccaatacattctccctgccatgcaaaacattcaaaatgcaatttcatctgcaaa |
29225556 |
T |
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| Q |
208 |
tttacagggacaaatcaaggtctcaatagcaattgacatgactttgattggtaattcatatccacccaataatggtgttttcactgaccaagcaaaacca |
307 |
Q |
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|||||| || |||||||||||||||| |||||| |||||||||||||||||||| |||| |||||||||| |||||||||||| |||||||||||||||| |
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| T |
29225557 |
tttacaaggccaaatcaaggtctcaacagcaatagacatgactttgattggtaagtcatttccacccaatgatggtgttttcagtgaccaagcaaaacca |
29225656 |
T |
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| Q |
308 |
tacatacaaccaataataaacttcctaaagaacaatggagcaccacttcttgccaatgtgtatccatacttcgcttatatcaataataaacaaagcattt |
407 |
Q |
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|| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||| || |||| |
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| T |
29225657 |
tatatacaaccaataataaacttcctaaacaacaatggagcaccacttcttgctaatgtgtatccgtacttcgcttatattggtgataaggtaaacattc |
29225756 |
T |
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| Q |
408 |
ctcttgattatgctctttttagacaacaaggaa |
440 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
29225757 |
ctcttgactatgctctttttagacaacaaggaa |
29225789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 8 - 440
Target Start/End: Original strand, 29240533 - 29240965
Alignment:
| Q |
8 |
gatgtggctagggaaacccttaattctcttagaaatgccaatgaagccacaaattgggtcaatagatatgtgaaaccctatgctcgagatgttaaaatca |
107 |
Q |
| |
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|||||||| | ||||||||| |||||||| | ||| ||||||||| |||||||||||| | | |||||||| ||| ||||||| |||||| ||||||| |
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| T |
29240533 |
gatgtggccaaggaaaccctatcttctcttacagatggcaatgaagctacaaattgggtccaaaaatatgtgacaccatatgctcaagatgtaaaaatca |
29240632 |
T |
|
| Q |
108 |
agtacatcactgtcggaaatgaaattaaaccttatgacagtgaagcacaatccattctccctgccatgcaaaacattcaaaatgctatttcagcagccaa |
207 |
Q |
| |
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||||||||||||| |||||||||||||||||| |||||| |||||| |||| |||| | ||||||||||||||||||||||||| |||||| |||| || |
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| T |
29240633 |
agtacatcactgttggaaatgaaattaaacctaatgacaatgaagcccaatacattgccactgccatgcaaaacattcaaaatgcaatttcatcagcaaa |
29240732 |
T |
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| Q |
208 |
tttacagggacaaatcaaggtctcaatagcaattgacatgactttgattggtaattcatatccacccaataatggtgttttcactgaccaagcaaaacca |
307 |
Q |
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|||||| || |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||| | | |
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| T |
29240733 |
tttacaaggccaaatcaaggtctcaacagcaattgacatgactttgattggtacttcatatccacccaatgatggtgctttcactgaccaagcaaagcaa |
29240832 |
T |
|
| Q |
308 |
tacatacaaccaataataaacttcctaaagaacaatggagcaccacttcttgccaatgtgtatccatacttcgcttatatcaataataaacaaagcattt |
407 |
Q |
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|| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| |
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| T |
29240833 |
tatttacagccaataatagacttcctaaagaacaatggagcaccacttcttgccaatgtgtatccgtacttcgcttatatcggtaataagcaaagcattt |
29240932 |
T |
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| Q |
408 |
ctcttgattatgctctttttagacaacaaggaa |
440 |
Q |
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||||||| ||||||||||||| ||||||||||| |
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| T |
29240933 |
ctcttgactatgctctttttaaacaacaaggaa |
29240965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 19 - 440
Target Start/End: Original strand, 29250818 - 29251239
Alignment:
| Q |
19 |
ggaaacccttaattctcttagaaatgccaatgaagccacaaattgggtcaatagatatgtgaaaccctatgctcgagatgttaaaatcaagtacatcact |
118 |
Q |
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|||||||||| ||||||| | ||||| |||||| |||||||||||| | | ||||||| ||||||||||| |||||| |||||||||||||||||| |
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| T |
29250818 |
ggaaaccctttcctctcttacagatgccggtgaagctacaaattgggtccaaaagtatgtgacaccctatgctcaagatgtaaaaatcaagtacatcact |
29250917 |
T |
|
| Q |
119 |
gtcggaaatgaaattaaaccttatgacagtgaagcacaatccattctccctgccatgcaaaacattcaaaatgctatttcagcagccaatttacagggac |
218 |
Q |
| |
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|| |||||||||||||||||| |||||| |||||| |||| |||| | |||||||||| |||||||||||||| |||||| | || |||||||| || | |
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| T |
29250918 |
gttggaaatgaaattaaacctaatgacaatgaagcccaatacattgccactgccatgcagaacattcaaaatgcaatttcatctgcaaatttacaaggcc |
29251017 |
T |
|
| Q |
219 |
aaatcaaggtctcaatagcaattgacatgactttgattggtaattcatatccacccaataatggtgttttcactgaccaagcaaaaccatacatacaacc |
318 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| | || |||||||| |
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| T |
29251018 |
aaatcaaggtctcaacagcaattgacatgactttgattggtaattcatatccacccaatgctggagttttcactgatcaagcaaattcttatatacaacc |
29251117 |
T |
|
| Q |
319 |
aataataaacttcctaaagaacaatggagcaccacttcttgccaatgtgtatccatacttcgcttatatcaataataaacaaagcatttctcttgattat |
418 |
Q |
| |
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|||||| |||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
29251118 |
aataattaacttcctggtgaagaatggagcaccacttcttgccaatgtgtatccgtacttcgcttatattggtaataaacaaagcatttctcttgactat |
29251217 |
T |
|
| Q |
419 |
gctctttttagacaacaaggaa |
440 |
Q |
| |
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| |||||||| ||||||||||| |
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| T |
29251218 |
gttctttttaaacaacaaggaa |
29251239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 347 - 440
Target Start/End: Complemental strand, 29253447 - 29253354
Alignment:
| Q |
347 |
gcaccacttcttgccaatgtgtatccatacttcgcttatatcaataataaacaaagcatttctcttgattatgctctttttagacaacaaggaa |
440 |
Q |
| |
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|||||||||||||| |||||| |||| ||||||||||||||| | || ||||| |||| ||||||||| ||||||||||| ||||||||||| |
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| T |
29253447 |
gcaccacttcttgcaaatgtgcatccgtacttcgcttatatcggtgatccacaaaacattcctcttgattttgctctttttaaacaacaaggaa |
29253354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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