View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5439_high_12 (Length: 228)
Name: NF5439_high_12
Description: NF5439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5439_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12834767 - 12834987
Alignment:
| Q |
1 |
cctccaagatatataacagggctctttgcgagagaaatccatctagaacaaacatgattgaaaaatccaaaaaccgatgaaaccaattatcaagcnnnnn |
100 |
Q |
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| T |
12834767 |
cctccaagatatataacagggctctttgcgagagaaatccatctagaacaaacatgattgaaaaatccaaacacccatgaaaccaattctcaagcaaaaa |
12834866 |
T |
|
| Q |
101 |
nnngtccaagtctacctcttgttccaaaacccattaagttttggttgggaaatttgtttattacattgcaaatcaaaatttactcgtggattttacctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12834867 |
aa-gtccaagtctacctcttgttccaaaacccattaagttttgcttgggaaatttgtttattacattgcaaatcaaaatttactcgtggattttacctcc |
12834965 |
T |
|
| Q |
201 |
aaaaataatccactgatgaatg |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
12834966 |
aaaaataatccactgatgaatg |
12834987 |
T |
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