View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5439_high_13 (Length: 217)
Name: NF5439_high_13
Description: NF5439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5439_high_13 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 79 - 217
Target Start/End: Complemental strand, 42240729 - 42240591
Alignment:
| Q |
79 |
cagccaaactaactctttctctaattttagttcaatgtttgaaagtcacctacttcaatgaaggagccatccaatctcctatacaaaaccattttctata |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
42240729 |
cagccaaactaactctttctctaattttagttcaatgtttgaaagtcacctacttcaatgaaggagccatctcaactcctatacaaaaccattttctata |
42240630 |
T |
|
| Q |
179 |
ccaactccaaccaccaacgaaagctgcctattttattat |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| |||| |
|
|
| T |
42240629 |
ccaactccaaccaccaacgaaagcagcctcttttcttat |
42240591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University