View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5439_high_15 (Length: 208)
Name: NF5439_high_15
Description: NF5439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5439_high_15 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 3248 - 3421
Alignment:
| Q |
18 |
aaaggcgcacttcagtatttgttcggagagaaacatttctagatattgtatgtgatgctttggccgagtacaagtacttgggtccaaaccagagagcaga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3248 |
aaaggcgcacttcagtatttgttcggagagaaacatttctagatattgtatgtgatgctttggccgagtacaagtacttgggtcctaaccagagagcaga |
3347 |
T |
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| Q |
118 |
cttggttctagcctgcaggtaacacattttttcatatctttaccgggcctatattgatctaataatctgaatag |
191 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3348 |
cttggttctagcctgcaggtaacaaattttttcatatctttaccgggactatattgatctaataatctgaatag |
3421 |
T |
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Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 21448288 - 21448115
Alignment:
| Q |
18 |
aaaggcgcacttcagtatttgttcggagagaaacatttctagatattgtatgtgatgctttggccgagtacaagtacttgggtccaaaccagagagcaga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21448288 |
aaaggcgcacttcagtatttgttcggagagaaacatttctagatattgtatgtgatgctttggccgagtacaagtacttgggtcctaaccagagagcaga |
21448189 |
T |
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| Q |
118 |
cttggttctagcctgcaggtaacacattttttcatatctttaccgggcctatattgatctaataatctgaatag |
191 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
21448188 |
cttggttctagcctgcaggtaacaaattttttcatatctttaccgggactatattgatctaataatctgaatag |
21448115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 40684059 - 40684165
Alignment:
| Q |
32 |
gtatttgttcggagagaaacatttctagatattgtatgtgatgctttggccgagtacaagtacttgggtccaaaccagagagcagacttggttctagcct |
131 |
Q |
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||||||||| |||| ||||| ||| |||||||||| ||||||| | |||| |||||||| || |||||||||||||||||||||||||| | ||||| | |
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| T |
40684059 |
gtatttgttaggagggaaacttttttagatattgtctgtgatgttctggctgagtacaaatatgtgggtccaaaccagagagcagacttgatgctagctt |
40684158 |
T |
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| Q |
132 |
gcaggta |
138 |
Q |
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||||||| |
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| T |
40684159 |
gcaggta |
40684165 |
T |
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