View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5439_high_2 (Length: 457)

Name: NF5439_high_2
Description: NF5439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5439_high_2
NF5439_high_2
[»] chr1 (7 HSPs)
chr1 (11-438)||(34478616-34479058)
chr1 (164-219)||(9955100-9955155)
chr1 (164-219)||(25146833-25146888)
chr1 (160-219)||(9327280-9327339)
chr1 (164-219)||(23528665-23528720)
chr1 (155-219)||(12513281-12513345)
chr1 (173-225)||(18891747-18891799)
[»] chr2 (5 HSPs)
chr2 (164-219)||(1404792-1404847)
chr2 (170-216)||(1690830-1690876)
chr2 (164-219)||(31238042-31238097)
chr2 (164-219)||(31578014-31578069)
chr2 (160-225)||(15516618-15516683)
[»] chr6 (10 HSPs)
chr6 (164-218)||(26053362-26053416)
chr6 (164-218)||(26073415-26073469)
chr6 (164-219)||(6943525-6943580)
chr6 (164-219)||(30912477-30912532)
chr6 (164-214)||(7223528-7223578)
chr6 (164-225)||(2912306-2912367)
chr6 (164-215)||(15528179-15528230)
chr6 (160-219)||(17250062-17250121)
chr6 (164-218)||(10509089-10509143)
chr6 (170-219)||(27233342-27233391)
[»] chr8 (8 HSPs)
chr8 (164-219)||(5922058-5922113)
chr8 (155-219)||(15294670-15294734)
chr8 (155-219)||(15475039-15475103)
chr8 (160-211)||(6292415-6292466)
chr8 (164-219)||(17647002-17647057)
chr8 (164-218)||(477113-477167)
chr8 (171-219)||(3094318-3094366)
chr8 (167-219)||(22910267-22910319)
[»] chr7 (5 HSPs)
chr7 (164-219)||(5058538-5058593)
chr7 (164-217)||(11326395-11326448)
chr7 (164-219)||(8346598-8346653)
chr7 (164-219)||(26281374-26281429)
chr7 (164-212)||(44944921-44944969)
[»] chr5 (8 HSPs)
chr5 (164-219)||(20923727-20923782)
chr5 (164-219)||(23172497-23172552)
chr5 (164-219)||(18051595-18051650)
chr5 (160-219)||(18843720-18843779)
chr5 (164-219)||(19042454-19042509)
chr5 (164-219)||(22645784-22645839)
chr5 (164-219)||(27340251-27340306)
chr5 (164-219)||(43234877-43234932)
[»] chr4 (3 HSPs)
chr4 (164-215)||(4156772-4156823)
chr4 (164-219)||(5362028-5362083)
chr4 (160-219)||(9770117-9770176)
[»] chr3 (5 HSPs)
chr3 (164-219)||(28745779-28745834)
chr3 (164-219)||(3449356-3449411)
chr3 (164-219)||(24649754-24649809)
chr3 (164-219)||(29067293-29067348)
chr3 (164-219)||(30727756-30727811)


Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 438
Target Start/End: Complemental strand, 34479058 - 34478616
Alignment:
Q  11 cacagattctacaaattcatacacgtgtgtcgaatgaagccaaacctgcatagaaatgaagtctctacgagggt-------cgaatgaa---gccaaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       | ||   |   |  |||||    
T  34479058 cacagattctacaaattcatacacgtgtgtcgaatgaagccaaacctgcatagaaatgaagtctctacgagagttattatcctaagacacggggtaaaca 34478959  T
Q  101 tgcatgtcagtgacaataatctaattgtgtttataaacaagggtaaggtattgtaat-------ggtgttaaaatcccgacttaaatcttaaaatttgga 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||   | ||||||||       | |||||||||||||||||||||||||||||||||     
T  34478958 tgcatgtcagtgacaataatctaattgtgtttataaacaagggtc--gaattgtaataagcattgttgttaaaatcccgacttaaatcttaaaatttggg 34478861  T
Q  194 attttgtgactttcttcaccttcaaccattcatataatgtaaatagtgatcttgttgcattagccacacaaatgttaagaactagtaatattgaccccca 293  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34478860 attttgtgactttcttcaccttcaacgattcatatcatgtaaatagtgatcttgttgcattagccacacaaatgttaagaactagtaatattgaccccca 34478761  T
Q  294 aaaagtgaaaatgtccaaacaagatatatagccctagttcaagctccacatcttgttaattaatggtataatggttgttccagattataatgaaaacatt 393  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34478760 aaaagtgaaaatgtccaaacaagatatatagccctagttcaagttccacatcttgttaattaatggtataatggttgttccagattataatgaaaacatt 34478661  T
Q  394 aatttgaagtcgaatatgacgggtgtaagtccacagggttacact 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34478660 aatttgaagtcgaatatgacgggtgtaagtccacagggttacact 34478616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 9955155 - 9955100
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||| ||||||||| |||||||| | |||||| |||||||||||||||||||    
T  9955155 aaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaac 9955100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 25146888 - 25146833
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    ||||||| |||||||||| |||||||  |||||||| |||||||||||||||||||    
T  25146888 aaaatcctgacttaaatcctaaaattcagaattttgcgactttcttcaccttcaac 25146833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 9327339 - 9327280
Alignment:
Q  160 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    ||||||||||| |||||||||| |||||||| |  ||||| |||||||| ||||||||||    
T  9327339 tgttaaaatcctgacttaaatcctaaaatttagggttttgcgactttctacaccttcaac 9327280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 23528665 - 23528720
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||| |||||||||||||||||  | |||||| ||||||||||| |||||||    
T  23528665 aaaatcccaacttaaatcttaaaattcaggattttgcgactttcttcatcttcaac 23528720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 12513281 - 12513345
Alignment:
Q  155 aatggtgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||| ||| |||||||||||||||||| || ||| | | |||||| ||||||||||| |||||||    
T  12513281 aatgttgtcaaaatcccgacttaaatcctacaatctaggattttgcgactttcttcagcttcaac 12513345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 18891799 - 18891747
Alignment:
Q  173 acttaaatcttaaaatttggaattttgtgactttcttcaccttcaaccattca 225  Q
    |||||||||||||||||| || |||| ||||||| |||| ||||||| |||||    
T  18891799 acttaaatcttaaaatttagatttttttgactttattcatcttcaacgattca 18891747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 1404792 - 1404847
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||||||||||  |||||||| | ||||||||||||||||||||||||||    
T  1404792 aaaatcccgacttaaattctaaaatttaggattttgtgactttcttcaccttcaac 1404847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 1690876 - 1690830
Alignment:
Q  170 ccgacttaaatcttaaaatttggaattttgtgactttcttcaccttc 216  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||    
T  1690876 ccgacttaaatcttaaaatttaggattttgtgactttcttcaccttc 1690830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 31238097 - 31238042
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||||||||||| |||||| | | ||||||  ||||||||||||||||||    
T  31238097 aaaatcccgacttaaatcctaaaatctaggattttgccactttcttcaccttcaac 31238042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 31578014 - 31578069
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    ||||||||||||||||| |||||||||   |||||| || ||||||||||||||||    
T  31578014 aaaatcccgacttaaatgttaaaatttaagattttgcgattttcttcaccttcaac 31578069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 15516683 - 15516618
Alignment:
Q  160 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaaccattca 225  Q
    |||||||||| | ||||||||||||| |||  | |||||| |||||| |||||||||||| |||||    
T  15516683 tgttaaaatcgcaacttaaatcttaatattcagcattttgcgactttattcaccttcaacaattca 15516618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 26053416 - 26053362
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaa 218  Q
    ||||||||||||||||||||||||| | | |||||| ||||||||||||||||||    
T  26053416 aaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaa 26053362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 26073469 - 26073415
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaa 218  Q
    ||||||||||||||||||||||||| | | |||||| ||||||||||||||||||    
T  26073469 aaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaa 26073415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 6943580 - 6943525
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||||||||||| |||||||  | |||||| |||||||||||||||||||    
T  6943580 aaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcaccttcaac 6943525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 30912532 - 30912477
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||| ||||||||| |||||||| | |||||| |||||||||||||||||||    
T  30912532 aaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaac 30912477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 7223528 - 7223578
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcacct 214  Q
    |||||||||||||||||| |||||||| | |||||| ||||||||||||||    
T  7223528 aaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcacct 7223578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 2912367 - 2912306
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaaccattca 225  Q
    ||||||||||||||||||||||||||| | ||||||  ||||||| || ||||||| |||||    
T  2912367 aaaatcccgacttaaatcttaaaatttaggattttgcaactttctccatcttcaacgattca 2912306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 15528230 - 15528179
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcacctt 215  Q
    |||||||||||||||||| |||||||  | |||||| |||||||||||||||    
T  15528230 aaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcacctt 15528179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 17250062 - 17250121
Alignment:
Q  160 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||||||||||||||| ||||||   | ||||||  ||||||||||||||||||    
T  17250062 tgttaaaatcccgacttaaatcctaaaatccaggattttgcaactttcttcaccttcaac 17250121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 10509143 - 10509089
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaa 218  Q
    ||||||| |||||||||| |||||||  ||| ||||||||||||||||| |||||    
T  10509143 aaaatccagacttaaatcctaaaattcagaaatttgtgactttcttcacattcaa 10509089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 27233391 - 27233342
Alignment:
Q  170 ccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||||| ||||||   | ||||||||||||||||||||||||||    
T  27233391 ccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaac 27233342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 5922058 - 5922113
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||||||||||| ||||||   | ||||||||||||||||||||||||||    
T  5922058 aaaatcccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaac 5922113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 15294670 - 15294734
Alignment:
Q  155 aatggtgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||| ||| |||||||||||||||||| |||||||  | |||||| |||||| ||||||||||||    
T  15294670 aatgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaac 15294734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 15475039 - 15475103
Alignment:
Q  155 aatggtgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||| ||| |||||||||||||||||| |||||||  | |||||| |||||| ||||||||||||    
T  15475039 aatgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaac 15475103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 6292466 - 6292415
Alignment:
Q  160 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttca 211  Q
    ||||||||| |||||||||||||||||||||   ||||||||||||| ||||    
T  6292466 tgttaaaataccgacttaaatcttaaaatttaagattttgtgacttttttca 6292415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 17647002 - 17647057
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    ||||| |||||||||||| |||||||  | |||||| |||||||||||||||||||    
T  17647002 aaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaac 17647057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 477167 - 477113
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaa 218  Q
    ||||||| |||||||||| ||||||   | |||||||||||||||||||||||||    
T  477167 aaaatcctgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaa 477113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 3094366 - 3094318
Alignment:
Q  171 cgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||||||||||||  | ||||||  ||||||||||||||||||    
T  3094366 cgacttaaatcttaaaattcaggattttgctactttcttcaccttcaac 3094318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 22910319 - 22910267
Alignment:
Q  167 atcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    ||||||||||||||| |||||||| | |||||  |||||||||||| ||||||    
T  22910319 atcccgacttaaatcctaaaatttaggattttacgactttcttcacattcaac 22910267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 5058538 - 5058593
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||||||||||| |||||||  |||||||| || ||||||||||||||||    
T  5058538 aaaatcccgacttaaatcctaaaattcagaattttgcgattttcttcaccttcaac 5058593  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 11326395 - 11326448
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttca 217  Q
    |||||||| ||||||||| |||||||| | |||||| |||||||||||||||||    
T  11326395 aaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttca 11326448  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 8346653 - 8346598
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    ||||||| ||| ||||| ||||||||| | |||||| |||||||||||||||||||    
T  8346653 aaaatcctgacctaaatattaaaatttaggattttgcgactttcttcaccttcaac 8346598  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 26281429 - 26281374
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    ||||| |||||||||||| |||||||  | |||||| |||||||||||||||||||    
T  26281429 aaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaac 26281374  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 44944969 - 44944921
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcac 212  Q
    |||||||||||||||||| |||||||  | |||||| ||||||||||||    
T  44944969 aaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcac 44944921  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 20923727 - 20923782
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||||||||||| ||||||   |||||||| |||||||||||||||||||    
T  20923727 aaaatcccgacttaaatcctaaaatccagaattttgcgactttcttcaccttcaac 20923782  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 23172552 - 23172497
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||||||||||| |||||||| | |||||| ||||||||||| |||||||    
T  23172552 aaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcatcttcaac 23172497  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 18051650 - 18051595
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||||||||||| |||||| | | |||||| ||||||||||| |||||||    
T  18051650 aaaatcccgacttaaatcctaaaatataggattttgcgactttcttcaacttcaac 18051595  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 18843720 - 18843779
Alignment:
Q  160 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    ||||||||| |||||||||||| || ||||  | |||||| |||||||||||||||||||    
T  18843720 tgttaaaattccgacttaaatcctataattcaggattttgcgactttcttcaccttcaac 18843779  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 19042509 - 19042454
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||| ||||||||  ||||||||   ||||||||||||||||||||||||||    
T  19042509 aaaatcccaacttaaattctaaaatttaagattttgtgactttcttcaccttcaac 19042454  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 22645839 - 22645784
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||||||||||| ||||||   | |||||| |||||||||||||||||||    
T  22645839 aaaatcccgacttaaatcctaaaatccagtattttgcgactttcttcaccttcaac 22645784  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 27340306 - 27340251
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||||||||||| ||||||||   |||||| ||||||||||| |||||||    
T  27340306 aaaatcccgacttaaatcataaaatttatgattttgcgactttcttcatcttcaac 27340251  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 43234877 - 43234932
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||| ||||||||| |||||||  | |||||| |||||||||||||||||||    
T  43234877 aaaatcccaacttaaatcctaaaattcaggattttgcgactttcttcaccttcaac 43234932  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 4156772 - 4156823
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcacctt 215  Q
    ||||||||||||||||||||||||||| | ||||| ||||||| ||||||||    
T  4156772 aaaatcccgacttaaatcttaaaatttaggattttatgactttattcacctt 4156823  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 5362083 - 5362028
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||||||||||| |||||||  | |||||| ||||||||||| |||||||    
T  5362083 aaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcatcttcaac 5362028  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 9770117 - 9770176
Alignment:
Q  160 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||| ||||||||||  |||||| | | ||||||||||||| ||||||||||||    
T  9770117 tgttaaaatctcgacttaaattctaaaatctaggattttgtgacttttttcaccttcaac 9770176  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 28745779 - 28745834
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||| ||||||| |||||||| | |||||| |||||||||||||||||||    
T  28745779 aaaatcccgatttaaatcctaaaatttaggattttgcgactttcttcaccttcaac 28745834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 3449411 - 3449356
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||||||||||| |||||||  | |||||| ||||||||| |||||||||    
T  3449411 aaaatcccgacttaaatcctaaaattcaggattttgcgactttctttaccttcaac 3449356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 24649809 - 24649754
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||||||||||| |||||| | | ||||| |||||| |||||||||||||    
T  24649809 aaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaac 24649754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 29067293 - 29067348
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    |||||||||||||||||  |||||||  | |||||| |||||||||||||||||||    
T  29067293 aaaatcccgacttaaattctaaaattcaggattttgcgactttcttcaccttcaac 29067348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 30727811 - 30727756
Alignment:
Q  164 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 219  Q
    ||||||| |||||||||||||||||   |||||||  |||||||||||||||||||    
T  30727811 aaaatcctgacttaaatcttaaaatcctgaattttacgactttcttcaccttcaac 30727756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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