View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5439_low_3 (Length: 428)
Name: NF5439_low_3
Description: NF5439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5439_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Complemental strand, 48708325 - 48707938
Alignment:
| Q |
19 |
catagtacttgtaccaccgccgaaaaatttacaaaatttttacaatagaagatcgtatcctgttttttcgttcgtttcttattcatatatttgccctgta |
118 |
Q |
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| T |
48708325 |
catagtacttgtaccaccgccgaaaaatttacaaaaattttacaatagaagatcgtatcctgttttttcgttcgtttcttgttcatatatttgccctgta |
48708226 |
T |
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| Q |
119 |
gtatcataattattgtgcagtgcttttagtatatcatcaaaaaatgcacacaatggtttgtgaacaaatgctatttgattaatgtttgattaatgtttga |
218 |
Q |
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| T |
48708225 |
gtatcataattattgtgcagtgcttttagtatatcatcaaaaaatgcacacaatggtttgtgaacaaatgctatttgattaatgtttga----------- |
48708137 |
T |
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| Q |
219 |
gatatactaaaccatatatatata--gtagtggtaactggtaagtaactgtttccgatcgatatcattgaggttcaggctcggaatgagttaaaaccatt |
316 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48708136 |
gatatactaaaccatatatatatatagtggtggtaactggtaagtaactgtttccgatcgatatcattgaggttcaggctcggaatgagttaaaaccatt |
48708037 |
T |
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| Q |
317 |
gtagtttaataataacattaacactttcataatcatctgcatcatcactgatctggagccaactttgtcgaagaagaatatttgtgatttctgcatctc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48708036 |
gtagtttaataataacattaacactttcataatcatctgcatcatcactgatctggagccaactttgtcgaagaagaatatttgtgatttctgcatctc |
48707938 |
T |
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