View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5439_low_4 (Length: 377)
Name: NF5439_low_4
Description: NF5439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5439_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 2122157 - 2122508
Alignment:
| Q |
18 |
acattgttctagaaactcgatttgattcaaaggtatcatcaaatcatgatgcatgaacggtattaacaagtctttttctcgcacccaccaaggtcactat |
117 |
Q |
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| T |
2122157 |
acattgttctagaaactcgatttgattcaacggtatcatcagatcatgatgtatgaacggtattaacaagtctttttctcgcacccaccaaggtcactat |
2122256 |
T |
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| Q |
118 |
gaatgttaggttagtatcttttggctttgcaacacaccttctacatttcaagtaactatgaacaccatgttcaaaccttttctaaggaatttcattattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2122257 |
gaatgttaggttagtatcttttggctttgcaacacaccttcttcatttcaagtaactatgaacaccatgttcaaaccttttctaaggaatttcattattt |
2122356 |
T |
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| Q |
218 |
tattctttgatgatatcttgttatatagtaccttaatcatcagttcttcatagttgaagtagaatatgtctcagcatcccatcattgaataactg-nnnn |
316 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2122357 |
tattctttgatgatatcttgttatatagtaccttaataatcagttcttcatagttgaagtagaatatgtctcagcatcccatcatcgaataactgttttt |
2122456 |
T |
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| Q |
317 |
nnnnaggaaatcaacataaataacatagacactccgttaaaataagaataat |
368 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2122457 |
tttaaggaaatcaacataaataacatagacactccgtcaaaataagaataat |
2122508 |
T |
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