View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5439_low_8 (Length: 251)
Name: NF5439_low_8
Description: NF5439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5439_low_8 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 65 - 251
Target Start/End: Complemental strand, 15581830 - 15581640
Alignment:
| Q |
65 |
aagagtttaaatgcaaatataccatgtaattgatggtaagtttaagccacgtatatat----gatatttcttaaaccacaagaaacagagtgtagctgag |
160 |
Q |
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| T |
15581830 |
aagagtttacaaggaaatatatcacgtaattgatggtaagtttataccacatgtatataatatatatttcttaaaccacaagaaacagagtgtagctgag |
15581731 |
T |
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| Q |
161 |
accgagtctaaatgttttaatttagtgtgaaactttcatttgatcacatattcatatatcctattcagaaaatttcggtgtgtataacttt |
251 |
Q |
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| T |
15581730 |
accaagtctaaatgttttaatttagtgtgaaaccttcatttgatcacatattcatatatcctatccagaaaatttcgaggtgtataacttt |
15581640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 70 - 244
Target Start/End: Complemental strand, 15584780 - 15584613
Alignment:
| Q |
70 |
tttaaatgcaaatataccatgtaattgatggtaagtttaagccacgtatatatgatat----ttcttaaaccacaagaaacagagtgtagctgagaccga |
165 |
Q |
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| T |
15584780 |
tttaaatggaaatataacacgtaattgatggtaagtttaagccacgtgtatatgatatatatttcttaaaccacaagaaccagagtgtgg---------- |
15584691 |
T |
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| Q |
166 |
gtctaaatgttttaatttagtgtgaaactttcatttgatcacatattcatatatcctattcagaaaatttcggtgtgta |
244 |
Q |
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| T |
15584690 |
-tctaaatgtattaatttagtgtgaaacctttgtttgatcacatattcatatatcctatccagaatatttcggtgtgta |
15584613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 15550296 - 15550207
Alignment:
| Q |
65 |
aagagtttaaatgcaaatataccatgtaattgatggtaagtttaagccacgtatatatgatatttcttaaaccacaagaaacagagtgta |
154 |
Q |
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| T |
15550296 |
aagagttcaaatggaaatataccacgtaattgatggtaagtttaagccacgtgtatatgatatttcttgaaccacaagaaacagagtgta |
15550207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 15550202 - 15550139
Alignment:
| Q |
181 |
tttagtgtgaaactttcatttgatcacatattcatatatcctattcagaaaatttcggtgtgta |
244 |
Q |
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| T |
15550202 |
tttagtgtgaaaccttcgtttgatcacatattcatatatcctatccagaaaatttcggcgtgta |
15550139 |
T |
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