View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5440-Insertion-2 (Length: 1180)
Name: NF5440-Insertion-2
Description: NF5440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5440-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 803; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 803; E-Value: 0
Query Start/End: Original strand, 151 - 1073
Target Start/End: Original strand, 6855057 - 6855988
Alignment:
| Q |
151 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
250 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6855057 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
6855156 |
T |
|
| Q |
251 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtgggccttaaacatgga |
350 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6855157 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtgggccttaaacatgga |
6855256 |
T |
|
| Q |
351 |
atccccccttatgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtcggtaaacaagcttcccatcaagggttttgaca |
450 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6855257 |
atccccccttatgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtcggtaaacaagcttcccatcgagggttttgaca |
6855356 |
T |
|
| Q |
451 |
acccggactgtatataactacatttccaccatacttattcccaccaacatgaaaacaagcattaacaatatcttatttttcaggccacgaagcgcaattt |
550 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6855357 |
acccggactgtatataactacatttccaccatacttattcccaccaacatgaaaacaagcattaacaatatattatttttcaggccacgaagcgcaattt |
6855456 |
T |
|
| Q |
551 |
gcaaagttcnnnnnnntctatttatccacagagaaatatcatcactaaaaataaggaagaataaaagagacacaacacaagaccacttgcagtaataaaa |
650 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6855457 |
gcaaagttcaaaaaaatctatttatccacagagaaatatcatcactaaaaataaggaagaataaaagagacacaacacaagaccacttgcagtaataaaa |
6855556 |
T |
|
| Q |
651 |
ctttgtaaatcatcgaaatctcaaatatgtaagtataactctctacaattctagttccataggggcctggcatttccacttaatcacaaacaagaactcc |
750 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6855557 |
ctttgtaaatcatcgaaatctcaaatatgtaagtataactctctacatttctagttccataggggcctggcatttccacttaatcacaaacaagaactcc |
6855656 |
T |
|
| Q |
751 |
agatacagtgtctatgtgtatatagttcaattcacaaagtttcttaaaacataactcagaaaacttcctttgcatgttgcaacactactcaatatccaat |
850 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6855657 |
agatacagtgtctatgtgtatatagttcaattcacaaagtttcttaaaacataactcagaaaacttcctttgcatgttgcaacactactcaatatccgat |
6855756 |
T |
|
| Q |
851 |
aacagttactcattaaagat-aaacttcaccttaattccttctactaagtagcttccttacttacaaaaggaagtaattgatg-agggattaaaggagat |
948 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6855757 |
aacagttactcattaaagataaaacttcaccttaattccttctactaagtagcttccttacttacaaaaggaagtaattgatgaagggattaaaggagat |
6855856 |
T |
|
| Q |
949 |
gaagggataggaaggaattctct--aaaatt-aaaattatgagagtaagacttactt-gtgtc-atgatcccgactatttttgtggtgtacgtatttgta |
1043 |
Q |
| |
|
||||| |||| |||||||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||||||| | ||| ||||||||||||||| |
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| T |
6855857 |
gaaggaatagaaaggaattctcttaaaaattcaaaattatgagagtaagacttacttggtgtcaatgatcccgactatatatgt-gtgtacgtatttgta |
6855955 |
T |
|
| Q |
1044 |
cac---taaatcatactcatgtttaaaatcatg |
1073 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
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|
| T |
6855956 |
cacctaaaaatcatactcatgtttaaaatcatg |
6855988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 6e-74
Query Start/End: Original strand, 49 - 284
Target Start/End: Complemental strand, 6823258 - 6823024
Alignment:
| Q |
49 |
aaaattaacaaaggaaacaactctaatgaattttgtgcttgtactata-tcactcaaacctaaaactcctccaaaaagatatgtatctcctttcataaaa |
147 |
Q |
| |
|
|||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||| |
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| T |
6823258 |
aaaattcacaaagggaacaactctaataaattttgtgcttgtactataatcactcaaacctaaaattcctctgaaaagatatgt--ctcctttcataaaa |
6823161 |
T |
|
| Q |
148 |
ttcatcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttc |
247 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||| |
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| T |
6823160 |
ttcatcccttcaaagcttgtttttcctttctctttcggatcttcagaacattcttgactatctttttctcttcaaccaagaaagctcgaatgattctttc |
6823061 |
T |
|
| Q |
248 |
tcgaacagcaccaccagataaaacaccaccatatgca |
284 |
Q |
| |
|
|| |||||| || ||| |||||| || || ||||||| |
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| T |
6823060 |
tctaacagcgcctccacataaaatactacaatatgca |
6823024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 64 - 232
Target Start/End: Complemental strand, 24245859 - 24245690
Alignment:
| Q |
64 |
aacaactctaatgaattttgtgcttgtactata-tcactcaaacctaaaactcctccaaaaagatatgtatctcctttcataaaattcatcccttcaaag |
162 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| | |||||| ||| || ||| | | |||||||||| |
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|
| T |
24245859 |
aacagctctaataaattttgtgcttttactataatcactcaaacctaaaactcctccaaaaagatctttatctcgtttaatgaaacttaacccttcaaag |
24245760 |
T |
|
| Q |
163 |
cttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagc |
232 |
Q |
| |
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|||| |||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||||||||| |
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| T |
24245759 |
cttgcttttcctttgtcttttggatcttcaagactttcttgacgatcttttgctcttcaaccaagaaagc |
24245690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 6854969 - 6855059
Alignment:
| Q |
8 |
caaagatggttctctctatcattttcttcccttatttatacaaaattaacaaaggaaacaactctaatgaattttgtgcttgtactatatc |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6854969 |
caaagatggttctctctatcattttcttcccttatttatacaaaattaacaaaggaaacaactctaatgaattttgtgcttgtactatatc |
6855059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 342
Target Start/End: Complemental strand, 24245067 - 24244968
Alignment:
| Q |
243 |
ctttctcgaacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtgggcctta |
342 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |||||||| ||| || ||| |||| ||| ||||||||||| | |||||||||||||| ||||| |||| |
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|
| T |
24245067 |
ctttctctaacagcacctccagataaaactccaccataggcacgattcacagtcctcctgtttctaggtaacctagatctcttgtactcagtgggtctta |
24244968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 627 - 740
Target Start/End: Complemental strand, 6820859 - 6820746
Alignment:
| Q |
627 |
acaagaccacttgcagtaataaaactttgtaaatcatcgaaatctcaa-atatgtaagtataactctctacaattctagttccataggggcctggcattt |
725 |
Q |
| |
|
|||||||| ||||||| |||||||| ||| ||| | | ||||||||| ||||||||||| |||| |||||| ||||||| ||||| ||||||| ||||| |
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|
| T |
6820859 |
acaagaccccttgcagaaataaaaccttgcaaagccttaaaatctcaacatatgtaagtacaactgtctacatttctagtcccata-gggcctgtcattt |
6820761 |
T |
|
| Q |
726 |
ccacttaatcacaaa |
740 |
Q |
| |
|
||||| ||| ||||| |
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|
| T |
6820760 |
ccactcaattacaaa |
6820746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 431
Target Start/End: Complemental strand, 24242532 - 24242462
Alignment:
| Q |
362 |
tgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtc-ggtaaacaagctt |
431 |
Q |
| |
|
|||| |||||||||| ||||| |||||| |||||||||||||||||| | |||||| | ||||||||||| |
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|
| T |
24242532 |
tgaatcctctttccagtaacagggcatttaggtccactagctctcttcttggttgtctgataaacaagctt |
24242462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 2418844 - 2418914
Alignment:
| Q |
162 |
gcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagc |
232 |
Q |
| |
|
||||| ||||| ||||| || |||||||||||||| ||||| ||||| ||||||| |||||| | |||||| |
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| T |
2418844 |
gcttgcttttcttttgttttctggatcttcaaaactttcttaactattttttgctcttcaacaaggaaagc |
2418914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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