View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5440-Insertion-6 (Length: 615)
Name: NF5440-Insertion-6
Description: NF5440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5440-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 333
Target Start/End: Complemental strand, 4052188 - 4051862
Alignment:
| Q |
7 |
atgatgttcatcatcatgcactatacaaggttgtttcattatacttttgttgttgttctgcttcttcattttgtttcataagactagtgcatgtttggat |
106 |
Q |
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| T |
4052188 |
atgatgttcatcatcatgcactatacaaggttgtttcattatacttttgttgttcttctgcttcttaattttgtttcataagactagtgcatgtttggat |
4052089 |
T |
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| Q |
107 |
taacgattgactgaattagagtgtgttaccgttgttttgacaaaaattggatttgaagtttcaacaaattaaaattacggtgtcactgtaattttgtcaa |
206 |
Q |
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| T |
4052088 |
taacgattgactgaattagagtgtgttaccgttgttttgacaaaaattgaatttgaagtttcaacaaattaaaattacggtgtcactgtaattttgtcaa |
4051989 |
T |
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| Q |
207 |
aatttattgctaatttaagcaatgaatcctctttggttgatttttggctattttgttacagtttgtgtgtttcttcatcatgatgcactatacaaggttg |
306 |
Q |
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| T |
4051988 |
aatttattgctaatttaagcaatgaatcctctttggttgatttttggctattttgttacagtttgtgtgtttcttcatcatgatgcactatacaaggttg |
4051889 |
T |
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| Q |
307 |
ttgcattactctaaattgttgtgcttc |
333 |
Q |
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| T |
4051888 |
ttgcattactctaaattgttgtgcttc |
4051862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 395 - 610
Target Start/End: Complemental strand, 4051799 - 4051571
Alignment:
| Q |
395 |
agctatgagtgtatgtttagttttatggtgagtttgaccaaattacgatatat-------------tgataaaattaggctctcaagcttcaccttggct |
481 |
Q |
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| T |
4051799 |
agctatgagtgtatgtttagttttatggtgagtttgaccaaattacgatatataccactgtgattttgataaaattagactctcaagcttcaccttggct |
4051700 |
T |
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| Q |
482 |
tcaatcattgaccatgaagaagaagaaagtggcagaaatggaatgtcacaagccaatggttgtcaagtttattgcaagatccttcttctctcttttgatt |
581 |
Q |
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| T |
4051699 |
tcaatcattgaccatgaagaagaagaaagtggcagaaatggaatgtcacaagccaatggttgtcaagtttattgcaagatcctttttctctcttttgatt |
4051600 |
T |
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| Q |
582 |
tagtacttcaaaagtttccactttttcac |
610 |
Q |
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| T |
4051599 |
tagtacttcaaaagtttccactttttcac |
4051571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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