View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5440-Insertion-7 (Length: 576)
Name: NF5440-Insertion-7
Description: NF5440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5440-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 399 - 562
Target Start/End: Complemental strand, 50438920 - 50438757
Alignment:
| Q |
399 |
tatccctcttaatattattnnnnnnngagagaaggaatatgagtgcttgatttaacgaataaagttacatgcactaatttgtacaccatatgctaatttc |
498 |
Q |
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| T |
50438920 |
tatccctcttaatattattaaaaaaatagagaaggaatatgagtgcttgatttaacgaataaagttacatgcactaatttgtacaccatatgctaatttc |
50438821 |
T |
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| Q |
499 |
gtgttctagatttacggaaagaaaactttgcactaaattacacatcgagcctcaaagatacttg |
562 |
Q |
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| T |
50438820 |
gtgttctagatttacggaaagaaaactttgcactaaattacacatcgagcctcaaagatacttg |
50438757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 223 - 409
Target Start/End: Complemental strand, 50439112 - 50438940
Alignment:
| Q |
223 |
ctattcctacgcagacttattagctaaaaacaaattttcttcttcttacaattgcttaaaaaaggatttcatggttttttcttcccggtttttattaatt |
322 |
Q |
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| T |
50439112 |
ctatttctacgcagacttattagctaaaaacaaattttcttcttcttacaattgcttaaaaaaggatttcatggttttt--------------attaatt |
50439027 |
T |
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| Q |
323 |
caaaatgtatttttcttcaagctatttcggtgttggattgtaagggtgttcccaccaccggtttagttgatcaacttatccctctta |
409 |
Q |
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| T |
50439026 |
caaaatgtatttttcttcaagctatctcggtgttggattgtaagggtgttcccaccaccggtttagttgatcaacttatccctctta |
50438940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 8 - 214
Target Start/End: Complemental strand, 50439401 - 50439162
Alignment:
| Q |
8 |
gtggagatttgcttagagactaccaatgtagtcttat-------------tgtaatcttgctcgcaa-ccattctcagtgtgctgagatgtaaagtttag |
93 |
Q |
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| T |
50439401 |
gtggagatttgcttagagactaccaatgtagtcttatacagggtttctattgtaatcttgctcgcaaaccattctcagtgtgctgagatgtaaagtttag |
50439302 |
T |
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| Q |
94 |
ttcatgccatgtgtattgctcgcaatcttcaccttg-------------------agattctaccctaattgcaactgtttttaatcaatcaacctcaat |
174 |
Q |
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| T |
50439301 |
ttcatgccatgtgtattgctcacaatcttcaccttgatcatgtcgttttttagacagattctactctaattgcaactgtttttaatcaatcagcctcaat |
50439202 |
T |
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| Q |
175 |
ctcttatctcaaatctctcttgaaagatgttcttaatgtc |
214 |
Q |
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| T |
50439201 |
ctcttatctcaaatttctcttgaaagatgttcttaatgtc |
50439162 |
T |
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