View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5440_high_10 (Length: 250)
Name: NF5440_high_10
Description: NF5440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5440_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 44800596 - 44800361
Alignment:
| Q |
1 |
tattaatcaataactaactttttcttatggcctaaaagcattatacaaaaatctaaaaataaccttgacttcaaaatgtatatacaaaatcaaattctag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44800596 |
tattaatcaataactaactttttcttatggcctaaaagcattatacaaaaatctaaaaataaccttgacttcaaaatgtatatacaaaatcaaattctag |
44800497 |
T |
|
| Q |
101 |
taaaattggctcctaggagtcaaataaggagcctcatcattactaacccagtcac---caacatcttgtgtttcaggtgtgtcattaggacaaacaggca |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44800496 |
taaaattggctcctaggagtcaaataaggagcctcatcattactaacccaatcaccaacaacatcttgagtttcaggtgtgtcattaggacaaacaggca |
44800397 |
T |
|
| Q |
198 |
taattctcacccatggtttagttgtaggcaacaatg |
233 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
44800396 |
taatcctcacccatggtttagttgtaggcaacaatg |
44800361 |
T |
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