View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5440_high_11 (Length: 245)
Name: NF5440_high_11
Description: NF5440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5440_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 13715194 - 13715409
Alignment:
| Q |
9 |
tgagatgaataatctataaaaaagttcttatgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatga |
108 |
Q |
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|||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715194 |
tgagatgaataatccataaaaaagttcttgtgtatgtacttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatga |
13715293 |
T |
|
| Q |
109 |
ctacttatttgaaaccatcaccatttcaatggaactactgtaggggagttgttgaatagtattgatatnnnnnnnnnnnnngtaccaagagagagaaaga |
208 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13715294 |
ctacttatttaaaaccatcaccatttcaatgga---actgtaggggagttgttgaatagtattgatataaaaatgaaaaaagtaccaagagagagaaaga |
13715390 |
T |
|
| Q |
209 |
gcaatgaaggagatagagt |
227 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
13715391 |
gcaatgaaggagatagagt |
13715409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 26 - 227
Target Start/End: Complemental strand, 4848802 - 4848604
Alignment:
| Q |
26 |
aaaaaagttcttatgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaaacca |
125 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4848802 |
aaaaaagttcttgtgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactgcttatttgaaacca |
4848703 |
T |
|
| Q |
126 |
tcaccatttcaatggaactactgtaggggagttgttgaatagtattgatatnnnnnnnnnnnnngtaccaagagagagaaagagcaatgaaggagataga |
225 |
Q |
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|||||||||||||| | |||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4848702 |
tcaccatttcaatg---caactgcaggggagttgttgaataatattgatataaaaataaaaaaagtaccaagagagagaaagagcaatgaaggagataga |
4848606 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 45907960 - 45908166
Alignment:
| Q |
10 |
gagatgaataatctataaaaaagttcttatgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgac |
109 |
Q |
| |
|
|||| |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45907960 |
gagaggaataatccataaaaaagttcttgtgaatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgac |
45908059 |
T |
|
| Q |
110 |
tacttatttgaaaccatcaccatttcaatggaactactgtaggggagttgttgaatagtattgatatnnnnnnnnnnnnngtaccaagagagagaaagag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45908060 |
tacttatttgaaaccatcaccatttcaatgga---actgcaggggagttgttgaatagtattgatataaaaatgaaaaaagtaccaagagagagaaagag |
45908156 |
T |
|
| Q |
210 |
caatgaagga |
219 |
Q |
| |
|
|||||||||| |
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|
| T |
45908157 |
caatgaagga |
45908166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 22917379 - 22917219
Alignment:
| Q |
9 |
tgagatgaataatctataaaaaagttcttatgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatga |
108 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22917379 |
tgagaggaataatccataaaaaagttcttatgt----gcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatga |
22917284 |
T |
|
| Q |
109 |
ctacttatttgaaaccatcaccatttcaatggaactactgtaggggagttgttgaatagtattgatat |
176 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
22917283 |
ctacttatttgaaaccatcaccctttcaatggaactac---atgggagttgttgaatagtattgatat |
22917219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 4784136 - 4784274
Alignment:
| Q |
9 |
tgagatgaataatctataaaaaagttcttatgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatga |
108 |
Q |
| |
|
||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4784136 |
tgagaggaataatccataaaaaagttctcgtgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatga |
4784235 |
T |
|
| Q |
109 |
c---tacttatttgaaaccatcaccatttcaatggaact |
144 |
Q |
| |
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| ||||| ||||||||||||||||||||||||||||| |
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| T |
4784236 |
ctagtacttgtttgaaaccatcaccatttcaatggaact |
4784274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 4784994 - 4785031
Alignment:
| Q |
190 |
gtaccaagagagagaaagagcaatgaaggagatagagt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
4784994 |
gtaccaagagagagaaagagcaatgaaggagatagagt |
4785031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 22917186 - 22917149
Alignment:
| Q |
190 |
gtaccaagagagagaaagagcaatgaaggagatagagt |
227 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
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|
| T |
22917186 |
gtaccaagagagagaaagagcaaggaaggagatagagt |
22917149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 5320150 - 5320185
Alignment:
| Q |
41 |
tatgtgcttaagatcagtttcaatcaatgaccataa |
76 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
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|
| T |
5320150 |
tatgtgcttgagatcagtttcaatcaatgaccataa |
5320185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 39773556 - 39773650
Alignment:
| Q |
27 |
aaaaagttcttatgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaa |
121 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39773556 |
aaaaagttcttgtgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaa |
39773650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 39773695 - 39773732
Alignment:
| Q |
190 |
gtaccaagagagagaaagagcaatgaaggagatagagt |
227 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
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|
| T |
39773695 |
gtaccaagagagaaaaagagcaatgaaggagatagagt |
39773732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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