View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5440_high_12 (Length: 242)
Name: NF5440_high_12
Description: NF5440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5440_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 43480855 - 43481073
Alignment:
| Q |
1 |
gttggagagagtgtggtggtggaggtgagttggtggccaatgatgtgaagcgattcttgaaggaagaatgtgagacattaaaagagtttggagtgacctg |
100 |
Q |
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| T |
43480855 |
gttggagagagtgtggtggtggaggtgagttggtggccaatgatgtgaagcgattcttgaaggaagaatgtgagacattaaaagagtttggagtgacctg |
43480954 |
T |
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| Q |
101 |
agattacgtggttccaaaaggaatctcttgaattcagggtcaaggtcacgttctagagcttgattcctgggtgcgaagatggtgatgttgtgattaccga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43480955 |
agattacgtggttccaaaaggaatctcttgaattcagggtcaaggtcacgttctagagcttgatttctgggtgcgaagatggtgatgttgtgattaccga |
43481054 |
T |
|
| Q |
201 |
cggcttcttctagtttttg |
219 |
Q |
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||||||||||||||||||| |
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| T |
43481055 |
cggcttcttctagtttttg |
43481073 |
T |
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