View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5440_high_13 (Length: 241)
Name: NF5440_high_13
Description: NF5440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5440_high_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 53866750 - 53866972
Alignment:
| Q |
19 |
tggccttgtgtatattttgttctttatttctttattagaccagtttgagatcaannnnnnnacaacatgaaactttcaatgtattctaatcaagatttga |
118 |
Q |
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| T |
53866750 |
tggccttgtgtatattttgttctttatttctttattagaccagtttgagatcaatttttttacaacatgaaactttcaatgtattctaatcaagatttga |
53866849 |
T |
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| Q |
119 |
tttaacgtctacagagcgtcgagttgacaaatgaagctcttgatttcttgaagaaaatatttgttgcgtttgatattaattctgtatgtcagccgctcac |
218 |
Q |
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| T |
53866850 |
tttaacgtctacagagcatcgagttgacaaatgaatctcttgatttcttgaagaaaatatttgttgcgtttgatattaattctgtatgtcagccgctcac |
53866949 |
T |
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| Q |
219 |
acgttctttaatattttcacttt |
241 |
Q |
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| T |
53866950 |
acgttctttaatattttcacttt |
53866972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 54160495 - 54160410
Alignment:
| Q |
100 |
tattctaatcaa-gatttgatttaacgtctacagagcgtcgagttgacaaatgaagctcttgatttcttgaagaaaatatttgttg |
184 |
Q |
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|||||||||||| |||| ||||||| | ||||||| ||||||||||||||||||||| | | |||||||||||| ||||||||| |
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| T |
54160495 |
tattctaatcaaagattggatttaatttgtacagagtgtcgagttgacaaatgaagctttagccttcttgaagaaagtatttgttg |
54160410 |
T |
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