View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5440_high_6 (Length: 281)
Name: NF5440_high_6
Description: NF5440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5440_high_6 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 38504338 - 38504076
Alignment:
| Q |
18 |
aatatatgattagtttagatcacgttgaaaattgtgaaattattattaatcatgaagttgaactaaccacaattttgactacgaattgaattaaccaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38504338 |
aatatatgattagtttagatcacgttgaaaattg--aaattattattaatcatgaagttgaactaaccacaattttgactacgaattgaattaaccaaat |
38504241 |
T |
|
| Q |
118 |
gaattaatcacatttttgaacgtgattaaccaggtgt-nnnnnnnnggggggactgaatatcattactcttattttattaacttatttattaatccgctc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38504240 |
gaattaatcacatttttgaacgtgattaaccaggtgtaaaaaaaaaagggtgactgaatatcattactcttattttattaacttatttattaatccgctc |
38504141 |
T |
|
| Q |
217 |
gaatgaagtttaggaattttaaatgaagttgatgttgaatgtggataagggattgattgtgtatt |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
38504140 |
gaatgaagtttaggaattttaaatgaagttgatgttgaatgtggctaagggatcgattgtgtatt |
38504076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 51854921 - 51854852
Alignment:
| Q |
45 |
aaaattgtgaaattattattaatcatgaagttgaactaaccacaattttgactacgaattgaattaacca |
114 |
Q |
| |
|
|||||||||||||| | |||||||| |||||||| |||||||||||| |||| |||| |||||||||| |
|
|
| T |
51854921 |
aaaattgtgaaattgtgtttaatcataaagttgaatcaaccacaattttaactatgaatagaattaacca |
51854852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 20727170 - 20727210
Alignment:
| Q |
20 |
tatatgattagtttagatcacgttgaaaattgtgaaattat |
60 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
20727170 |
tatatggttaatttagatcacgttgaaaattgtgaaattat |
20727210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 19296998 - 19297063
Alignment:
| Q |
49 |
ttgtgaaattattattaatcatgaagttgaactaaccacaattttgactacgaattgaattaacca |
114 |
Q |
| |
|
|||||||||| | ||||||||| ||||||| |||||| ||||||||| ||||||||||||||| |
|
|
| T |
19296998 |
ttgtgaaattgtggttaatcatgtagttgaattaaccagaattttgaccgtgaattgaattaacca |
19297063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University