View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5440_high_9 (Length: 251)
Name: NF5440_high_9
Description: NF5440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5440_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 7036323 - 7036555
Alignment:
| Q |
1 |
tatttatactaattaaaattgcccctatttgtgagctgtattttcctaatagtctgtaagaaggcactaaaaccaactaaagaaagagtaagaaataata |
100 |
Q |
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| T |
7036323 |
tatttatactaattaaaattgcccctatttgtgagctgtattttcctaatagtctgtaagaaggcactaaaaccaactaaagaaagagtaagaaataata |
7036422 |
T |
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| Q |
101 |
ttactaaacactttgtaaacattatggttttaccttcgcatgattacttgaaaacgcactttcgatcttacggatctgaaatcataagagtgcaattttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7036423 |
ttactaaacactttgtaaacattatggttttaccttcccatgattacttgaaaacgcactttcgatcttacggacctgaaatcataagagtgcaattttc |
7036522 |
T |
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| Q |
201 |
cctattattacaactgtaaatttaaagataaat |
233 |
Q |
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| T |
7036523 |
cctattattacaactgtaaatttaaagataaat |
7036555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 7897552 - 7897780
Alignment:
| Q |
1 |
tatttatactaattaaaattgcccctatttgtgagctgtattttcctaatagtctgtaagaaggcactaaaaccaactaaagaaagagtaagaaataata |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
7897552 |
tatttatactaattaaaatttcccctatttgtgagctgtattttcctaatagtctgtaag---gcactaaaaccaacaaaagaaagagtaagaaataata |
7897648 |
T |
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| Q |
101 |
ttactaaacactttgtaaacattatggttttaccttcgcatgattacttgaaaacgcactttcgatcttacggatctgaaatcataagagtgcaattttc |
200 |
Q |
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| T |
7897649 |
ttactaaacactttgtaaacattatggtgttaccttcacatgattccttgaaaacacactttcgatcttacggacctgaaatcataagagtggaattttc |
7897748 |
T |
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| Q |
201 |
cctattattacaactgtaaatttaaagataaa |
232 |
Q |
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| T |
7897749 |
tctattattacaactgtaaatttaaagataaa |
7897780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 233
Target Start/End: Original strand, 7039554 - 7039674
Alignment:
| Q |
112 |
tttgtaaacattatggttttaccttcgcatgattacttgaaaacgcactttcgatcttacggatctgaaatcataagagtgcaattttccctattattac |
211 |
Q |
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||||||||||||| |||| ||||||| || |||| ||| ||||| |||||| |||| || || ||||||||| || ||||||||||| ||||||||||| |
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| T |
7039554 |
tttgtaaacattacggttgtaccttcacaggattccttaaaaacacactttggatcatatcgacctgaaatcacaacagtgcaatttt-cctattattac |
7039652 |
T |
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| Q |
212 |
aactgtaaatttaaagataaat |
233 |
Q |
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| T |
7039653 |
aactgtaaatctgaagataaat |
7039674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 29377053 - 29377110
Alignment:
| Q |
176 |
ctgaaatcataagagtgcaattttccctattattacaactgtaaatttaaagataaat |
233 |
Q |
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||||||||| ||||| | |||||||| |||||||||||| | |||||||||||||||| |
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| T |
29377053 |
ctgaaatcacaagagagtaattttccatattattacaaccgcaaatttaaagataaat |
29377110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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