View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5440_low_1 (Length: 489)

Name: NF5440_low_1
Description: NF5440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5440_low_1
NF5440_low_1
[»] chr2 (4 HSPs)
chr2 (1-479)||(14149984-14150464)
chr2 (348-406)||(32835946-32836004)
chr2 (248-286)||(26423368-26423406)
chr2 (260-305)||(27950996-27951041)
[»] chr1 (5 HSPs)
chr1 (247-479)||(3214985-3215217)
chr1 (247-406)||(12928645-12928804)
chr1 (248-406)||(30091878-30092036)
chr1 (253-406)||(3158331-3158484)
chr1 (250-391)||(19477383-19477524)
[»] chr7 (3 HSPs)
chr7 (251-479)||(27804614-27804842)
chr7 (255-326)||(28841444-28841515)
chr7 (257-286)||(48207650-48207679)
[»] chr6 (10 HSPs)
chr6 (248-479)||(5477258-5477477)
chr6 (251-381)||(12200308-12200438)
chr6 (251-406)||(1512288-1512442)
chr6 (251-327)||(32542711-32542787)
chr6 (253-329)||(13243992-13244068)
chr6 (250-329)||(7417855-7417934)
chr6 (251-391)||(6643528-6643667)
chr6 (250-329)||(7413907-7413986)
chr6 (250-321)||(7424977-7425048)
chr6 (257-286)||(6816247-6816276)
[»] chr5 (8 HSPs)
chr5 (251-479)||(14489238-14489466)
chr5 (250-362)||(6291496-6291609)
chr5 (339-479)||(27039786-27039924)
chr5 (251-313)||(28463241-28463303)
chr5 (251-283)||(27039679-27039711)
chr5 (257-286)||(20864141-20864170)
chr5 (257-286)||(22697558-22697587)
chr5 (349-441)||(38356631-38356723)
[»] chr8 (6 HSPs)
chr8 (253-447)||(30273595-30273789)
chr8 (248-406)||(25939035-25939193)
chr8 (253-382)||(40796569-40796698)
chr8 (246-406)||(44587650-44587811)
chr8 (253-420)||(7176102-7176269)
chr8 (248-286)||(17904647-17904685)
[»] chr3 (10 HSPs)
chr3 (251-406)||(1538884-1539039)
chr3 (253-406)||(19792284-19792437)
chr3 (251-418)||(22522491-22522657)
chr3 (255-405)||(54332434-54332582)
chr3 (334-405)||(6032803-6032874)
chr3 (251-306)||(27393135-27393190)
chr3 (247-284)||(6032759-6032796)
chr3 (257-286)||(16932876-16932905)
chr3 (257-286)||(51899388-51899417)
chr3 (257-285)||(48536835-48536863)
[»] chr4 (6 HSPs)
chr4 (278-470)||(34767601-34767794)
chr4 (253-404)||(11116169-11116320)
chr4 (250-391)||(50858465-50858606)
chr4 (250-370)||(50150678-50150798)
chr4 (257-286)||(36220729-36220758)
chr4 (257-286)||(48255113-48255142)
[»] scaffold0169 (1 HSPs)
scaffold0169 (261-406)||(22666-22807)
[»] scaffold0036 (1 HSPs)
scaffold0036 (260-305)||(44386-44431)


Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 14149984 - 14150464
Alignment:
Q  1 ctctttacctccaatacatatcattctgcacaagaagatgtgtcattcttttcatcagattttaaaattgcagctccttttgagcctctctaataatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14149984 ctctttacctccaatacatatcattctgcacaagaagatgtgtcattcttttcatcagattttaaaattgcagctccttttgagcctctctaataatgat 14150083  T
Q  101 caaattgataatttattgaaaaaagttaaatatattttagttcgctat-aggttttatccaaagaaaattatttagcaaatannnnnnnnna-agggaaa 198  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||            |||||||    
T  14150084 cgaattgataatttattgaaaaaagttaaatatattttagttcgctatcaggttttatccaaagaaaattatttagcaaatttatttttttttagggaaa 14150183  T
Q  199 tatttagcatacatcatttacatttgcaactcactatgtannnnnnnagagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatag 298  Q
    ||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14150184 tatttagcatacatcatttacatttgcaactcactgtgtatttttttagagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatag 14150283  T
Q  299 aggtacattattaaagacatggggaccagctgagtatatggcctctttagcaagagtatgagcgacctcattcgcttgtctccggctgaactcatcctta 398  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14150284 aggtacattattaaatacatggggaccagctgagaatatggcctctttagcaagagtatgagcgacctcattcgcttgtctccgactgaactcatcctta 14150383  T
Q  399 gagttttcgaaaaaagcattacggcatcttttgcattcctccaaaattgaaccaaactcagacacatcattgctacctttg 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14150384 gagttttcgaaaaaagcattacggcatcttttgcattcctccaaaattgaaccaaactcagacacatcattgctacctttg 14150464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 406
Target Start/End: Original strand, 32835946 - 32836004
Alignment:
Q  348 gcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc 406  Q
    |||||| ||||||| |||||||||| ||||||||| || |||||| |||||||||||||    
T  32835946 gcaagattatgagctacctcattcgtttgtctccgactaaactcaaccttagagttttc 32836004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 26423406 - 26423368
Alignment:
Q  248 agggaaaatagcttatagcttttcattattaatcaaagt 286  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  26423406 agggaaagaagcttatagcttttcattattaatcaaagt 26423368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 27951041 - 27950996
Alignment:
Q  260 ttatagcttttcattattaatcaaagtcaaaatacatagaggtaca 305  Q
    |||||| ||||||||| ||||||||||| ||||||| |||||||||    
T  27951041 ttatagtttttcattaataatcaaagtcgaaatacaaagaggtaca 27950996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 247 - 479
Target Start/End: Complemental strand, 3215217 - 3214985
Alignment:
Q  247 gagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctcttt 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||  ||||||||||| |    
T  3215217 gagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacatcattaaagacatggggaccaactgaaaatatggcctctgt 3215118  T
Q  347 agcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcattacggcatcttttgcattcctccaaaatt 446  Q
    |||||||||||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3215117 agcaagagtatgagcgacctcattcgcttgtctcctactgaactccaccttagagttttcgaaaaaagcattacgacatcttttgcattcctccaaaatt 3215018  T
Q  447 gaaccaaactcagacacatcattgctacctttg 479  Q
    ||||||||||| ||| |||||||||||||||||    
T  3215017 gaaccaaactcggactcatcattgctacctttg 3214985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 406
Target Start/End: Complemental strand, 12928804 - 12928645
Alignment:
Q  247 gagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctcttt 346  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||  |||||||| |||||||| || | || |  ||| ||||      
T  12928804 gagggaaaatagcttatagcttttcattaataatcaaagtcgaaatacaaagaggtgcaacattaaagatatggggacaagttaagaaagtggtctctcg 12928705  T
Q  347 agcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc 406  Q
    ||  | ||| ||||| |||| |||||||||| |||| || |||||  |||||||||||||    
T  12928704 agataaagtgtgagcaaccttattcgcttgtttccgactaaactctaccttagagttttc 12928645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 248 - 406
Target Start/End: Original strand, 30091878 - 30092036
Alignment:
Q  248 agggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctcttta 347  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||| || ||| ||  |||||||| |||| ||| || | || |  || |||||  |    
T  30091878 agggaaaatagcttatagcttttcattaataatcaaagtcgaaatacaaagtggtgcaacattaaagatatggagactagttaagaaagtgtcctctcga 30091977  T
Q  348 gcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc 406  Q
    || ||||| ||||||||||| |||| ||||||||| || |||||  |||||| ||||||    
T  30091978 gctagagtgtgagcgacctccttcgattgtctccgactaaactctaccttagtgttttc 30092036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 406
Target Start/End: Original strand, 3158331 - 3158484
Alignment:
Q  253 aaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagcaag 352  Q
    ||||| ||||||||| ||||| | ||||||||||| ||||||| |||||| || ||||||||| |||  ||| | || || |  ||||||||  ||||||    
T  3158331 aaatatcttatagctgttcatcaataatcaaagtcgaaatacaaagaggtgcagtattaaagatatgaagactaactaagaaagtggcctctcgagcaag 3158430  T
Q  353 agtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc 406  Q
    |||||||| ||| ||| ||||||||||||| || |||||  |||||||||||||    
T  3158431 agtatgagtgacttcactcgcttgtctccgactaaactctaccttagagttttc 3158484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 19477524 - 19477383
Alignment:
Q  250 ggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagc 349  Q
    ||||||||||||||||||||| ||||  |||||| |||  ||||||  ||||||||| ||||||   |||||||| |||| || |  ||||||||   ||    
T  19477524 ggaaaatagcttatagcttttgattaaaaatcaacgtcgtaatacaatgaggtacatcattaaaagtatggggactagctaagaaagtggcctctcgtgc 19477425  T
Q  350 aagagtatgagcgacctcattcgcttgtctccggctgaactc 391  Q
    |||||| |||||||||||||||||||||||||| || |||||    
T  19477424 aagagtgtgagcgacctcattcgcttgtctccgactaaactc 19477383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 251 - 479
Target Start/End: Original strand, 27804614 - 27804842
Alignment:
Q  251 gaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagca 350  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  27804614 gaaaatagtttatagcttttcattattaatcaaagtcaaaatacatagaggtacatcattaaagacatggggaccagctgagaatatggcctctctagca 27804713  T
Q  351 agagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcattacggcatcttttgcattcctccaaaattgaac 450  Q
    ||||||||||||||||||||||||||| |||| ||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27804714 agagtatgagcgacctcattcgcttgtttccgactgaactccaccttagagttttcgaaaaaaacattacggcatcttttgcattcctccaaaattgaac 27804813  T
Q  451 caaactcagacacatcattgctacctttg 479  Q
    ||||||| ||||||||||| |||| ||||    
T  27804814 caaactcggacacatcattactacttttg 27804842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 326
Target Start/End: Original strand, 28841444 - 28841515
Alignment:
Q  255 atagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggacca 326  Q
    ||||||||||| ||||||||| ||||||||||||||||| | |||||| ||| |||||||| |||| |||||    
T  28841444 atagcttatagtttttcattaataatcaaagtcaaaatataaagaggtgcatcattaaagatatggagacca 28841515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 48207679 - 48207650
Alignment:
Q  257 agcttatagcttttcattattaatcaaagt 286  Q
    ||||||||||||||||||||||||||||||    
T  48207679 agcttatagcttttcattattaatcaaagt 48207650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 248 - 479
Target Start/End: Original strand, 5477258 - 5477477
Alignment:
Q  248 agggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctcttta 347  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| ||| |||||||||||||||||||||| || ||||||            
T  5477258 agggaaaataggttatagcttttcattattaatcaaagtcaagatacaaagaggtgcatcattaaagacatggggaccagctaagaatatggt------- 5477350  T
Q  348 gcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcattacggcatcttttgcattcctccaaaattg 447  Q
         |||||||| ||||||||||||||||||||| || |||||  ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||    
T  5477351 -----agtatgagtgacctcattcgcttgtctccgactaaactccaccttagagttttcaaaaaaagcattacgacatcttttgcatccctccaaaattg 5477445  T
Q  448 aaccaaactcagacacatcattgctacctttg 479  Q
    ||||||||||||||||||||||||||||||||    
T  5477446 aaccaaactcagacacatcattgctacctttg 5477477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 381
Target Start/End: Original strand, 12200308 - 12200438
Alignment:
Q  251 gaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagca 350  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  |||||||||| |||||| || |||| || || | || |||  |||||| |||||    
T  12200308 gaaaatagcttatagcttttcattattaatcaatgtcaaaatactaagaggtacatcattaaaaacttgggaactaggtaagaataaagcctctctagca 12200407  T
Q  351 agagtatgagcgacctcattcgcttgtctcc 381  Q
    |||||||||||||||||||||||||||||||    
T  12200408 agagtatgagcgacctcattcgcttgtctcc 12200438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 251 - 406
Target Start/End: Complemental strand, 1512442 - 1512288
Alignment:
Q  251 gaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagca 350  Q
    |||||||||||||||||||||||||  |||||| ||| | ||||| |||||||||| || ||| | |||||||| ||||  | | ||| |||||  ||||    
T  1512442 gaaaatagcttatagcttttcattaaaaatcaa-gtcgagatacaaagaggtacatcatcaaaaatatggggactagctagggaaatgacctctcgagca 1512344  T
Q  351 agagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc 406  Q
    ||||||||||||||| |||||||||||||||| || |||||  ||||||| |||||    
T  1512343 agagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttc 1512288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 32542711 - 32542787
Alignment:
Q  251 gaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccag 327  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |  ||||| ||| |||||||||||| |||||||    
T  32542711 gaaaatagcttatagcttttcattattaatcaatgtcaaaatataaggaggtgcatcattaaagacatgaggaccag 32542787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 13244068 - 13243992
Alignment:
Q  253 aaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagct 329  Q
    |||||||||||||||||||||||   |||||| || ||||||| |||||||||| || ||||| |||||||| ||||    
T  13244068 aaatagcttatagcttttcattagatatcaaaatcgaaatacaaagaggtacatcatcaaagagatggggactagct 13243992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 329
Target Start/End: Original strand, 7417855 - 7417934
Alignment:
Q  250 ggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagct 329  Q
    |||||||||||||||| || |||||||||||||  ||| ||||||| ||| ||| | ||||||||| |||||||| ||||    
T  7417855 ggaaaatagcttatagtttgtcattattaatcattgtcgaaatacaaagatgtataatattaaagatatggggactagct 7417934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 391
Target Start/End: Complemental strand, 6643667 - 6643528
Alignment:
Q  251 gaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagca 350  Q
    |||||||||| |||| |||||||||||||||||  ||| |||||| | |||| |||  ||||| |||||||||||| || |  | | | ||| ||| |||    
T  6643667 gaaaatagctaataggttttcattattaatcaatatcataataca-aaaggtgcatctttaaatacatggggaccaactaaaaacaagacctttttggca 6643569  T
Q  351 agagtatgagcgacctcattcgcttgtctccggctgaactc 391  Q
    ||| |||||||||| | ||||| ||||||||| || |||||    
T  6643568 agaatatgagcgacttaattcgtttgtctccgactaaactc 6643528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 329
Target Start/End: Original strand, 7413907 - 7413986
Alignment:
Q  250 ggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagct 329  Q
    ||||||||||||||||||| || ||||||||||  ||| ||||||| |||  || | ||||||||| |||||||| ||||    
T  7413907 ggaaaatagcttatagcttgtcgttattaatcattgtcgaaatacaaagatttataatattaaagatatggggactagct 7413986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 7424977 - 7425048
Alignment:
Q  250 ggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggg 321  Q
    ||||||||||||||||||| |||||||||||||  ||| ||||||| ||| ||| |  |||||||| |||||    
T  7424977 ggaaaatagcttatagcttgtcattattaatcattgtcgaaatacaaagatgtataacattaaagatatggg 7425048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 6816247 - 6816276
Alignment:
Q  257 agcttatagcttttcattattaatcaaagt 286  Q
    ||||||||||||||||||||||||||||||    
T  6816247 agcttatagcttttcattattaatcaaagt 6816276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 251 - 479
Target Start/End: Original strand, 14489238 - 14489466
Alignment:
Q  251 gaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagca 350  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| |||||| || ||||||| |||| || |||  |||||| |||||    
T  14489238 gaaaatagcttatagtttttcattattaatcaatgtcaaaatacaaagaggtacatcattaaaaacttggggactagctaagaataaagcctctctagca 14489337  T
Q  351 agagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcattacggcatcttttgcattcctccaaaattgaac 450  Q
    |||||||||||||||||||||||||||||||| || ||||   ||||||||||||||||| || |||| ||||||||||||||||||||||| ||||  |    
T  14489338 agagtatgagcgacctcattcgcttgtctccgactaaacttcaccttagagttttcgaaataaacattgcggcatcttttgcattcctccaatattgctc 14489437  T
Q  451 caaactcagacacatcattgctacctttg 479  Q
    |||| ||||| ||||  ||||| ||||||    
T  14489438 caaattcagaaacattgttgctgcctttg 14489466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 250 - 362
Target Start/End: Complemental strand, 6291609 - 6291496
Alignment:
Q  250 ggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaaga-catggggaccagctgagtatatggcctctttag 348  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| | |||||| | |||||||| ||||| | ||| ||     
T  6291609 ggaaaatagcttatagtttttcattattaatcaaagtcaaaatacatagaggtacatcataaaaaatcatgggaatcagctgagaatatgacatctctaa 6291510  T
Q  349 caagagtatgagcg 362  Q
    ||| ||||||||||    
T  6291509 caaaagtatgagcg 6291496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 339 - 479
Target Start/End: Original strand, 27039786 - 27039924
Alignment:
Q  339 gcctctttagcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcattacggcatcttttgcattcct 438  Q
    |||||| ||||||||||||||||||||||||||||| ||||||   | |||||  ||||||||||||||||| || |||| |||||||||||||| ||||    
T  27039786 gcctctctagcaagagtatgagcgacctcattcgctcgtctcct--taaactccaccttagagttttcgaaataaacattgcggcatcttttgcaatcct 27039883  T
Q  439 ccaaaattgaaccaaactcagacacatcattgctacctttg 479  Q
    |||| ||||  ||||| ||||| ||||  ||||| ||||||    
T  27039884 ccaatattgctccaaattcagaaacattgttgctgcctttg 27039924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 28463303 - 28463241
Alignment:
Q  251 gaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaa 313  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||| ||| |||||| ||||||    
T  28463303 gaaaatagcttatagtttttcattattaatcaatgtcaaaatacaaagaagtacatcattaaa 28463241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 27039679 - 27039711
Alignment:
Q  251 gaaaatagcttatagcttttcattattaatcaa 283  Q
    |||||||||||||||||||||||||||||||||    
T  27039679 gaaaatagcttatagcttttcattattaatcaa 27039711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 20864170 - 20864141
Alignment:
Q  257 agcttatagcttttcattattaatcaaagt 286  Q
    ||||||||||||||||||||||||||||||    
T  20864170 agcttatagcttttcattattaatcaaagt 20864141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 22697558 - 22697587
Alignment:
Q  257 agcttatagcttttcattattaatcaaagt 286  Q
    ||||||||||||||||||||||||||||||    
T  22697558 agcttatagcttttcattattaatcaaagt 22697587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 441
Target Start/End: Complemental strand, 38356723 - 38356631
Alignment:
Q  349 caagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcattacggcatcttttgcattcctcca 441  Q
    |||||||||||| ||| ||| || |||||||||| || || ||  ||||||| ||||||||| || ||||||  |||||||| ||||| ||||    
T  38356723 caagagtatgagggacttcactcacttgtctccgactaaattccaccttagaattttcgaaataaacattacaacatcttttacattcgtcca 38356631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 253 - 447
Target Start/End: Original strand, 30273595 - 30273789
Alignment:
Q  253 aaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagcaag 352  Q
    ||||| ||||||||||||||||||||||||  ||||||||  | |||| || || ||| || ||||||||||||| | ||  || ||| ||| |||||||    
T  30273595 aaatatcttatagcttttcattattaatcattgtcaaaatgtaaagagttatatcattgaaaacatggggaccagttaagagtaaggcttctctagcaag 30273694  T
Q  353 agtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcattacggcatcttttgcattcctccaaaattg 447  Q
    |||||||||||| ||||||||||||||||| || |||||  |||||| ||||| |||| || ||||||| |||||||| ||||| ||||| ||||    
T  30273695 agtatgagcgacttcattcgcttgtctccgactaaactccaccttagtgtttttgaaataaccattacgacatcttttacattcatccaatattg 30273789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 248 - 406
Target Start/End: Complemental strand, 25939193 - 25939035
Alignment:
Q  248 agggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctcttta 347  Q
    ||||||||||| |||||| ||||||||| || |||||||| ||||||| |||||| ||  |||||||| |||||||  |||| || |  ||||||||  |    
T  25939193 agggaaaataggttatagtttttcattaatactcaaagtcgaaatacaaagaggtgcaacattaaagatatggggattagctaagaaagtggcctctcga 25939094  T
Q  348 gcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc 406  Q
    || | ||| |||||||||||||||||||||||||| || |||||  |||||||||||||    
T  25939093 gctaaagtgtgagcgacctcattcgcttgtctccgactaaactctaccttagagttttc 25939035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 382
Target Start/End: Complemental strand, 40796698 - 40796569
Alignment:
Q  253 aaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagcaag 352  Q
    |||||||||||||||||||||||   |||||| || ||||||| |||||||||| || ||||| || ||||| |||| |  |  |||| ||| |||||||    
T  40796698 aaatagcttatagcttttcattaaatatcaaaatcgaaatacaaagaggtacatcatcaaagagatagggactagctaataaagtggcatctctagcaag 40796599  T
Q  353 agtatgagcgacctcattcgcttgtctccg 382  Q
     |||||||| ||| |||| |||||| ||||    
T  40796598 tgtatgagcaaccacatttgcttgtttccg 40796569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 406
Target Start/End: Complemental strand, 44587811 - 44587650
Alignment:
Q  246 agagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaaga-catggggaccagctgagtatatggcctct 344  Q
    |||| |||||||||||||||||||||||||  |||| ||||| | ||||| | || ||||| || ||| | ||||| ||| ||||  | |  |||| |||    
T  44587811 agagtgaaaatagcttatagcttttcattaaaaatcgaagtcgagatacaaaaagatacatcataaaaaaacatggtgactagctagggaagtggcttct 44587712  T
Q  345 ttagcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc 406  Q
    | |||||||| |||||| ||| |||||| ||||||||| || |||||  |||||||||||||    
T  44587711 tgagcaagagcatgagcaaccacattcgattgtctccgactaaactccaccttagagttttc 44587650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 420
Target Start/End: Complemental strand, 7176269 - 7176102
Alignment:
Q  253 aaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagcaag 352  Q
    ||||| |||||||||||||||||   ||||||  | |||||||   |||||||  ||||||  ||||||||| |||| || || | ||||||  ||| |     
T  7176269 aaataacttatagcttttcattagatatcaaatgccaaatacaagaaggtacaccattaaaatcatggggactagctaagaatgtagcctctcgagctaa 7176170  T
Q  353 agtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcattac 420  Q
    | |||||||||| ||||||||||||||||  |  |||||| ||||||| ||||| ||| ||| |||||    
T  7176169 attatgagcgacttcattcgcttgtctcctacaaaactcaaccttagaattttcaaaataagaattac 7176102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 17904647 - 17904685
Alignment:
Q  248 agggaaaatagcttatagcttttcattattaatcaaagt 286  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  17904647 agggaaagaagcttatagcttttcattattaatcaaagt 17904685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 251 - 406
Target Start/End: Original strand, 1538884 - 1539039
Alignment:
Q  251 gaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagca 350  Q
    |||||||||||||| ||||||||||  |||||||||| | ||||| |||||||||| || ||| ||||||| || || |  | | |||||||||  ||||    
T  1538884 gaaaatagcttataacttttcattaaaaatcaaagtcgagatacaaagaggtacatcatcaaaaacatgggaactagttagggaaatggcctctggagca 1538983  T
Q  351 agagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc 406  Q
    |||||||||||||||  ||||||||||||||| || |||||  |||||||||||||    
T  1538984 agagtatgagcgaccatattcgcttgtctccgactaaactccaccttagagttttc 1539039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 406
Target Start/End: Complemental strand, 19792437 - 19792284
Alignment:
Q  253 aaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagcaag 352  Q
    |||||||||||||||||||||||   ||||||||| ||||||| |||||||||| || ||||| |||||||| |||| |  |  |||||||| |||||||    
T  19792437 aaatagcttatagcttttcattagatatcaaagtcgaaatacaaagaggtacatcatcaaagagatggggactagctaataaagtggcctctctagcaag 19792338  T
Q  353 agtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc 406  Q
     |||||||| ||| |||| |||||||||||  | |||||  |||||||||||||    
T  19792337 tgtatgagcaaccacatttgcttgtctccgattaaactccaccttagagttttc 19792284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 251 - 418
Target Start/End: Original strand, 22522491 - 22522657
Alignment:
Q  251 gaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagct-gagtatatggcctctttagc 349  Q
    |||||||| ||||| ||||| |||| ||||||||||| | ||||| | ||||||||||| ||| ||| ||| || |||| ||| |  |||| |||  |||    
T  22522491 gaaaatagtttataactttt-attaataatcaaagtcgagatacaaaaaggtacattatcaaaaacacgggaactagctagagaag-tggcttctcgagc 22522588  T
Q  350 aagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcatt 418  Q
    |||||||||||||||| |||||||||||||||| || |||||  ||||||||||||| |||||| ||||    
T  22522589 aagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagagttttcaaaaaaatcatt 22522657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 255 - 405
Target Start/End: Original strand, 54332434 - 54332582
Alignment:
Q  255 atagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagct-gagtatatggcctctttagcaaga 353  Q
    ||||||||||||||||||||| ||||||||||| | ||| | | |||||||| || ||| | |||||||| |||| ||| |  ||||||||  |||||||    
T  54332434 atagcttatagcttttcattaataatcaaagtcgagataaaaa-aggtacatcatcaaaaa-atggggactagctagagaag-tggcctctcgagcaaga 54332530  T
Q  354 gtatgagcgacctcattcgcttgtctccggctgaactcatccttagagtttt 405  Q
    |||||||||||| |||||| ||||||||| || |||||  ||||||||||||    
T  54332531 gtatgagcgaccacattcgtttgtctccgactaaactccaccttagagtttt 54332582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 405
Target Start/End: Original strand, 6032803 - 6032874
Alignment:
Q  334 atatggcctctttagcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagtttt 405  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||||| || ||| |  ||||||||||||    
T  6032803 atatggcctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaacaccaccttagagtttt 6032874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 27393135 - 27393190
Alignment:
Q  251 gaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacat 306  Q
    |||||||||||||||||||||||||  |||||||||| | ||||| ||||||||||    
T  27393135 gaaaatagcttatagcttttcattaaaaatcaaagtcgagatacaaagaggtacat 27393190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 6032759 - 6032796
Alignment:
Q  247 gagggaaaatagcttatagcttttcattattaatcaaa 284  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  6032759 gagggaaaatagtttatagcttttcattaataatcaaa 6032796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 16932876 - 16932905
Alignment:
Q  257 agcttatagcttttcattattaatcaaagt 286  Q
    ||||||||||||||||||||||||||||||    
T  16932876 agcttatagcttttcattattaatcaaagt 16932905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 51899388 - 51899417
Alignment:
Q  257 agcttatagcttttcattattaatcaaagt 286  Q
    ||||||||||||||||||||||||||||||    
T  51899388 agcttatagcttttcattattaatcaaagt 51899417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 48536835 - 48536863
Alignment:
Q  257 agcttatagcttttcattattaatcaaag 285  Q
    |||||||||||||||||||||||||||||    
T  48536835 agcttatagcttttcattattaatcaaag 48536863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 278 - 470
Target Start/End: Original strand, 34767601 - 34767794
Alignment:
Q  278 aatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagcaagagtatgagcgacctcattcgcttgt 377  Q
    ||||||| |||||||| |||||||||||| ||||||||||||   |||| || || |||||   | |||||||| |||||||||||| |||||||||| |    
T  34767601 aatcaaaatcaaaatatatagaggtacatcattaaagacatgataaccaactaagaatatgatatttttagcaaaagtatgagcgacttcattcgcttat 34767700  T
Q  378 ctccggctgaactcatccttagagttttcgaaaaaag-cattacggcatcttttgcattcctccaaaattgaaccaaactcagacacatcattg 470  Q
    || || |||||||   ||||||| ||    ||||||  ||||    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34767701 cttcgactgaacttcaccttagaattaaaaaaaaaaaacattgaaacatcttttgcattcccccaaaattgaaccaaactcagacacatcattg 34767794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 404
Target Start/End: Complemental strand, 11116320 - 11116169
Alignment:
Q  253 aaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagcaag 352  Q
    |||||||||||||||||||||||   |||||| |  ||||||| | ||| |||| ||||||   |||||||| |||| || |  |||||||||  |||||    
T  11116320 aaatagcttatagcttttcattaaatatcaaatttgaaatacaaaaaggcacatcattaaaattatggggactagctaaggacgtggcctcttgtgcaag 11116221  T
Q  353 agtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttt 404  Q
    ||| ||||||||||| |||||||||||||| || |||||  |||||||||||    
T  11116220 agtgtgagcgacctcgttcgcttgtctccgactaaactctaccttagagttt 11116169  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 50858606 - 50858465
Alignment:
Q  250 ggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagc 349  Q
    ||||| |||||||||| |||||||||   || |||| | |||||||  | || ||||||| ||| |||||||||| |||| || | | |||||||  |||    
T  50858606 ggaaagtagcttatagtttttcattacatattaaagaccaaatacaaggtggaacattatcaaacacatggggactagctaaggacaaggcctctcgagc 50858507  T
Q  350 aagagtatgagcgacctcattcgcttgtctccggctgaactc 391  Q
    |||||||||||||||||| |||||||||||||| || |||||    
T  50858506 aagagtatgagcgacctcgttcgcttgtctccgactaaactc 50858465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 370
Target Start/End: Complemental strand, 50150798 - 50150678
Alignment:
Q  250 ggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagc 349  Q
    |||||| | |||||||||||||| | |||||||  ||||||||||| |||| |||||||||| | ||| |||||||| || || || ||   ||| ||||    
T  50150798 ggaaaacaacttatagcttttcactgttaatcattgtcaaaatacaaagagatacattattacatacacggggaccaactaagaatgtgaattctctagc 50150699  T
Q  350 aagagtatgagcgacctcatt 370  Q
    |||||||||||||||||||||    
T  50150698 aagagtatgagcgacctcatt 50150678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 36220729 - 36220758
Alignment:
Q  257 agcttatagcttttcattattaatcaaagt 286  Q
    ||||||||||||||||||||||||||||||    
T  36220729 agcttatagcttttcattattaatcaaagt 36220758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 48255142 - 48255113
Alignment:
Q  257 agcttatagcttttcattattaatcaaagt 286  Q
    ||||||||||||||||||||||||||||||    
T  48255142 agcttatagcttttcattattaatcaaagt 48255113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 406
Target Start/End: Original strand, 22666 - 22807
Alignment:
Q  261 tatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagcaagagtatgag 360  Q
    |||||||||||||||  ||||||||||     |||||||||||||| || ||| | |||||||| ||||  | | |||| ||||  ||||||||||||||    
T  22666 tatagcttttcattaaaaatcaaagtc----gacatagaggtacatcatcaaaaatatggggactagctagggaaatggtctctcgagcaagagtatgag 22761  T
Q  361 cgacctcattcgcttgtctccggctgaactcatccttagagttttc 406  Q
    ||||| |||||||||||||||| || ||||   |||||||||||||    
T  22762 cgaccacattcgcttgtctccgactaaacttcaccttagagttttc 22807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 44431 - 44386
Alignment:
Q  260 ttatagcttttcattattaatcaaagtcaaaatacatagaggtaca 305  Q
    |||||| ||||||||| ||||||||||| ||||||| |||||||||    
T  44431 ttatagtttttcattaataatcaaagtcgaaatacaaagaggtaca 44386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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