View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5440_low_2 (Length: 475)
Name: NF5440_low_2
Description: NF5440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5440_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 116 - 465
Target Start/End: Complemental strand, 26273771 - 26273422
Alignment:
| Q |
116 |
attctactatatatatttatagaagcaaaagacaaactaactcatacaaagcatgaatgacatgcgtcttctaactaatttatataacttcctttgcaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26273771 |
attctactatatatatttatagaagcaaaagacaaactaactcatacaaagcatgaatgacatgcgtcttctaactaatttatataacttcctttgcaaa |
26273672 |
T |
|
| Q |
216 |
ttttctctagttttgaatttgaaagttgatgacttcccaagcataaccatctctttaaaacttctttccacacttcaaatgtggtagttatttgaaattt |
315 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26273671 |
ttttctctagttttaattttgaaagttgatgacttcccaagcataaccatctctctaaaacttctttccacacttcaaatgtggtagttatttgaaattt |
26273572 |
T |
|
| Q |
316 |
gaatgtttataaatcttcgaatattgccaaagttatcttctttctagttttgttatttttatctttgaagtaacctttcgacttaaccgaaatatgatta |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26273571 |
gaatgtttataaatcttcgaatattgccaaagttatcttctttctagttttgtcatttttatctttgaagtaacctttcgacttaaccgaaatatgatta |
26273472 |
T |
|
| Q |
416 |
atagattgcttcaaatgaggtctttctaggaatttctcagatgccctttg |
465 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26273471 |
atagattgcttcaaatgtggtctttctaggaatttctcagatgccctttg |
26273422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 16357596 - 16357632
Alignment:
| Q |
18 |
aaatagaactaataaaataagtgggggagaagggagt |
54 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
16357596 |
aaatagaagtaataaaataagtgggggaggagggagt |
16357632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 21977443 - 21977407
Alignment:
| Q |
18 |
aaatagaactaataaaataagtgggggagaagggagt |
54 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
21977443 |
aaatagaagtaataaaataagtgggggaggagggagt |
21977407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 21999874 - 21999838
Alignment:
| Q |
18 |
aaatagaactaataaaataagtgggggagaagggagt |
54 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
21999874 |
aaatagaagtaataaaataagtgggggaggagggagt |
21999838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 12351159 - 12351211
Alignment:
| Q |
18 |
aaatagaactaataaaataagtgggggagaagggagtgaaattaggataagta |
70 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
12351159 |
aaatagaagtaataaaataagtgggggaagagggagtaaaattatgataagta |
12351211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 15870718 - 15870754
Alignment:
| Q |
18 |
aaatagaactaataaaataagtgggggagaagggagt |
54 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
15870718 |
aaatagaagtaataaaataagtgggggaggagggagt |
15870754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 15888284 - 15888320
Alignment:
| Q |
18 |
aaatagaactaataaaataagtgggggagaagggagt |
54 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
15888284 |
aaatagaagtaataaaataagtgggggaggagggagt |
15888320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 5764071 - 5764035
Alignment:
| Q |
18 |
aaatagaactaataaaataagtgggggagaagggagt |
54 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
5764071 |
aaatagaagtaataaaataagtgggggaggagggagt |
5764035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University