View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5440_low_3 (Length: 451)
Name: NF5440_low_3
Description: NF5440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5440_low_3 |
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| [»] chr8 (4 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 7 - 451
Target Start/End: Original strand, 38120297 - 38120742
Alignment:
| Q |
7 |
ctttcaaaatgtactgatcattaatgtttgcataatcaaacgaatatttagaaggattcattgcacatttatttcacttcagtaaataaattcaaatgga |
106 |
Q |
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| T |
38120297 |
ctttcaaaatgtactgatcattaacctttgcataatcaaacgaatatttagaaggattcattgcacatttatttcacttcagtaaataaattcaaatgga |
38120396 |
T |
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| Q |
107 |
ctcgttcaatttgacttgttactaaatcatttaacccaaaaattatctctggacttcaaatatcactctagcaacttggaagacaacaagaacgcg-taa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
38120397 |
ctcgttcaatttgacttgttactaaatcatttaacccaaaaattatctctggaccctaaatatcactctagcaacttggaagacaacaagaacgtgctaa |
38120496 |
T |
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| Q |
206 |
gcagaaaacatgaattgataaacaagataatgtcaagaaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatagtgt |
305 |
Q |
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| T |
38120497 |
gcagaaaatatgaattgataaacaagataatgtcaagaaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatagtgt |
38120596 |
T |
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| Q |
306 |
agttggataatagtgtgaattaactacaaattcaaagtttcacttcatgagacaaagaagtgcagcacaaactaaaaagaactaagcaaccgtgtgaatt |
405 |
Q |
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| T |
38120597 |
agttggataatagtgtgaattaactacaaattcaaagtttcacttcatgagacaaagaagtgcagcacaaactaaaaagaactaaggaaccgtgtgaatt |
38120696 |
T |
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| Q |
406 |
agctacattagatggacaacagcgtaaacttattaactacaaattt |
451 |
Q |
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| T |
38120697 |
agctacattagatggacaacagtgtaaacttattaactacaaattt |
38120742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 34593078 - 34593022
Alignment:
| Q |
320 |
gtgaattaactacaaattcaaagtttcacttcatgagacaaagaagtgcagcacaaa |
376 |
Q |
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| T |
34593078 |
gtgaattaactacaaattcaaagtttgacttcaacagataaagaagtgcagcacaaa |
34593022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 38609533 - 38609476
Alignment:
| Q |
319 |
tgtgaattaactacaaattcaaagtttcacttcatgagacaaagaagtgcagcacaaa |
376 |
Q |
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| T |
38609533 |
tgtgaattaactacaaattcaaagtttcacttcaatggagaaagaagcgcagcacaaa |
38609476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 38794316 - 38794259
Alignment:
| Q |
319 |
tgtgaattaactacaaattcaaagtttcacttcatgagacaaagaagtgcagcacaaa |
376 |
Q |
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| T |
38794316 |
tgtgaattaactacaaattcaaagtttcacttcaacggagaaagaagcgcagcacaaa |
38794259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 227 - 451
Target Start/End: Original strand, 28730100 - 28730319
Alignment:
| Q |
227 |
acaagataatgtcaagaaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatagtgtagtt--ggataatagtgtgaa |
324 |
Q |
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| T |
28730100 |
acaagataatctcaagaaaatctgtaaagactaaatccaca-------ttattaacgaactagttaagcaacatagagtatatatggataatagtgtgaa |
28730192 |
T |
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| Q |
325 |
ttaactacaaattcaaagtttcacttcatgagacaaagaagtgcagcacaaactaaaaagaactaagcaaccgtgtgaattagctacattagatggacaa |
424 |
Q |
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| T |
28730193 |
ttaactacaaattcagagtttcacttcatgagacaaagaagtgcagcacaaactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaa |
28730292 |
T |
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| Q |
425 |
cagcgtaaacttattaactacaaattt |
451 |
Q |
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| T |
28730293 |
cggtgtaaacttattaactacaaattt |
28730319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 302
Target Start/End: Complemental strand, 33078768 - 33078696
Alignment:
| Q |
228 |
caagataatgtcaagaaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatag |
302 |
Q |
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| T |
33078768 |
caagataatctcaagaaaa-ctgtaaagactaaatcaacaaa-cggtttattaaagaactaataaagcaacatag |
33078696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 3928106 - 3928143
Alignment:
| Q |
358 |
caaagaagtgcagcacaaactaaaaagaactaagcaac |
395 |
Q |
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| T |
3928106 |
caaagaagtgctgcacaaactaaaaagatctaagcaac |
3928143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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