View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5440_low_4 (Length: 381)
Name: NF5440_low_4
Description: NF5440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5440_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 33938499 - 33938153
Alignment:
| Q |
19 |
gggagaagagattttattgaaagaagctgaaatggctattgaagcaatggattcagatggtgatgattatttgagtttggaggaattaattgctttgatg |
118 |
Q |
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| T |
33938499 |
gggagaagagattttattgaaagaagctgaaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatg |
33938400 |
T |
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| Q |
119 |
gaggaagggggagaggaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaaga |
218 |
Q |
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|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33938399 |
gaagaaggtggagaggaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacaccaaagagtttgaaga |
33938300 |
T |
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| Q |
219 |
ggatgcttaagaagatgggggaaactaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatga |
318 |
Q |
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| T |
33938299 |
ggatgcttaagaagatgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatga |
33938200 |
T |
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| Q |
319 |
attcataacaatgatgcagtgatgatgttatatatgtttcgattcat |
365 |
Q |
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| T |
33938199 |
attcataacaatgatgcagtgatgatgttatatatgttttgattcat |
33938153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 33931694 - 33931372
Alignment:
| Q |
19 |
gggagaagagattttattgaaagaagctgaaatggctattgaagcaatggattcagatggtgatgattatttgagtttggaggaattaattgctttgatg |
118 |
Q |
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| T |
33931694 |
gggagaagagattttattgaaagaagctgaaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatg |
33931595 |
T |
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| Q |
119 |
gaggaagggggagaggaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaaga |
218 |
Q |
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|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33931594 |
gaagaaggtggagaggaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacaccaaagagtttgaaga |
33931495 |
T |
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| Q |
219 |
ggatgcttaagaagatgggggaaactaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatga |
318 |
Q |
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| T |
33931494 |
ggatgcttaagaagatgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatga |
33931395 |
T |
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| Q |
319 |
attcataacaatgatgcagtgat |
341 |
Q |
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| T |
33931394 |
attcataacaatgatgcagtgat |
33931372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 34 - 340
Target Start/End: Complemental strand, 42840097 - 42839791
Alignment:
| Q |
34 |
attgaaagaagctgaaatggctattgaagcaatggattcagatggtgatgattatttgagtttggaggaattaattgctttgatggaggaagggggagag |
133 |
Q |
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||||||||||| || || |||||||| ||| ||||||| |||||||||| | |||||||||||||| || || || | ||||| |||||||||| |
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| T |
42840097 |
attgaaagaagtggagattgctattgaggcattggattctgatggtgatgggttattgagtttggaggatttgatagcgctaatggaatcagggggagag |
42839998 |
T |
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| Q |
134 |
gaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaaga |
233 |
Q |
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||| |||| |||||||||||||| ||||| ||||| ||||||||| ||| |||||| | |||||||| |||||||||||||||||| | || ||| |
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| T |
42839997 |
gaagaaaaattgaaggatttgagggaagcttttgaaatgtatgatgatgaagggtgtgggtacataacaccaaagagtttgaagaggatgttgaaaaagt |
42839898 |
T |
|
| Q |
234 |
tgggggaaactaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcataacaatgat |
333 |
Q |
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||||||| ||||||| ||||| |||||||||| ||||||||| |||||||||||||| |||||| ||||||| ||||| || |||| || ||||| |
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| T |
42839897 |
tgggggattctaagtccattgaagaatgtaaagtgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagagttcagaatcatgat |
42839798 |
T |
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| Q |
334 |
gcagtga |
340 |
Q |
| |
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| T |
42839797 |
ggagtga |
42839791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 34 - 323
Target Start/End: Complemental strand, 42846905 - 42846616
Alignment:
| Q |
34 |
attgaaagaagctgaaatggctattgaagcaatggattcagatggtgatgattatttgagtttggaggaattaattgctttgatggaggaagggggagag |
133 |
Q |
| |
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||||||||||| |||||| |||||||| ||| ||||||| |||||||||| | |||||||||| || || ||| | || ||||| |||||||||| |
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| T |
42846905 |
attgaaagaagttgaaattgctattgaggcattggattctgatggtgatgggttattgagtttgggagatttgattacgttaatggaatcagggggagag |
42846806 |
T |
|
| Q |
134 |
gaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaaga |
233 |
Q |
| |
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|| |||| |||||||||||||| ||||| ||||| |||||||||| ||| ||||| || ||||| || || ||||||||||||||| | || || |
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| T |
42846805 |
gaggaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacgccaaaaagtttgaagaggatgttgaaaaaac |
42846706 |
T |
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| Q |
234 |
tgggggaaactaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattca |
323 |
Q |
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||||||| ||||||| ||||| ||||| ||| ||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
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| T |
42846705 |
tgggggattctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagaattca |
42846616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 323
Target Start/End: Complemental strand, 42849892 - 42849603
Alignment:
| Q |
34 |
attgaaagaagctgaaatggctattgaagcaatggattcagatggtgatg-attatttgagtttggaggaattaattgctttgatggaggaagggggaga |
132 |
Q |
| |
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||||||||||| ||||| || ||||| ||| ||||||| |||||||||| |||||| |||||||||||| || || | ||||| ||||||||| |
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| T |
42849892 |
attgaaagaagtggaaattgcaattgaggcattggattctgatggtgatggattatt-gagtttggaggatttgataaagcttatggaatcagggggaga |
42849794 |
T |
|
| Q |
133 |
ggaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaag |
232 |
Q |
| |
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|||| |||| |||||||||||||| ||||| ||||| |||||||||| ||| ||||| || |||||||| || ||||||||||||||| | || || |
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| T |
42849793 |
ggaagaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacaccaaaaagtttgaagaggatgttgaaaaaa |
42849694 |
T |
|
| Q |
233 |
atgggggaaactaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattca |
323 |
Q |
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||||||| ||||||| ||||| ||||| ||| ||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
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| T |
42849693 |
ctgggggattctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagaattca |
42849603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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