View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5440_low_5 (Length: 347)

Name: NF5440_low_5
Description: NF5440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5440_low_5
NF5440_low_5
[»] chr1 (1 HSPs)
chr1 (1-347)||(44800643-44800989)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 44800989 - 44800643
Alignment:
Q  1 ataaagagaaaatgaggcgttagatgagtgttggaaaattttgagcgttcaaatatcattattgtttactaaaccccatgcatagttgtatcacacttct 100  Q
    ||||||||||||| | || ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || |||| ||||||| ||||||    
T  44800989 ataaagagaaaataaagcattagatgagtgttggaaaattttgagcgtccaaatatcattattgtttattaaaccccttgtatagctgtatcatacttct 44800890  T
Q  101 cctttcaaattgtgacatttcaattcagttttcaaattgtaacattgtcttatcaatttctaacattaattccatatgagctagtcacataaccctactt 200  Q
    ||||||||||||| |||||||| |||||||||| |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44800889 cctttcaaattgtaacatttcagttcagttttcgaattgtaacaatgtcagatcaatttctaacattaattccatatgagctagtcacataaccctactt 44800790  T
Q  201 tccttgtaacattaaatttgaaacaatgtccatttaagttaatgagttctattatgagtccaatttttacatcaactaaactagaggcatcataaccatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44800789 tccttgtaacattaaatttgaaacaatgtccatttaagttaatgagtcctattatgagtccaatttttacatcaactaaaccagaggcatcataaccatt 44800690  T
Q  301 ttgatgaaaatactaaataaaacataaaacagccttaacaaacaaat 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44800689 ttgatgaaaatactaaataaaacataaaacagccttaacaaacaaat 44800643  T

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