View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5440_low_7 (Length: 277)
Name: NF5440_low_7
Description: NF5440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5440_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 7897368 - 7897111
Alignment:
| Q |
1 |
cccgaggccttcaactttaatcctcagctcaaactagttgtgcaacccaaccaactccacacccaaaataaaataaaataatatggtgttcaagtgagat |
100 |
Q |
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| T |
7897368 |
cccggggcctccaactttaatcctcagctcaaactagttgtgcaacccaaccaactccacacccaaaataaaataa-----tatggtgttcgagtgagat |
7897274 |
T |
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| Q |
101 |
tttctggatgatacat-gacaattctnnnnnnnnnnnnnntggctttaggtgatttgctcaccagttggtttatatacattaaaatgggctgtagtgtcg |
199 |
Q |
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| T |
7897273 |
tttctggatgatacattgacaattctaaaaaagaaaaaaatggctttaggtgatttgctcaccagttggtttatatacattaaaatgggctgtagtgtcg |
7897174 |
T |
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| Q |
200 |
catattatttcatctggagggaactgtattattttaagcgtctttcatgggaaagatttgtat |
262 |
Q |
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| T |
7897173 |
catattatttcatctggagggaactgtattattttaagcgtctttcatgggaaagatgtgtat |
7897111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 7036138 - 7035871
Alignment:
| Q |
1 |
cccgaggccttcaactttaatcctcagctcaaactagttgtgcaacccaaccaactccacacccaaaataaaataaaataa-----tatggtgttcaagt |
95 |
Q |
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| T |
7036138 |
cccggggcctccaactctaatcctcagctcaaactagttgtgcaacccaaccaactccacacccaaaataaaataaaataaaataatatggtgttcaagt |
7036039 |
T |
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| Q |
96 |
gagattttctggatgatacat-gacaattctnnnnnnnnnnnnnntggctttaggtgatttgctcaccagttggtttatatacattaaaatgggctgtag |
194 |
Q |
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| T |
7036038 |
gagattttctggatgatacattgacaattctgaaaaagaaaaaaatggctttaggtgatttgctcaccagttggtttatatacattaaaatgggctgtag |
7035939 |
T |
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| Q |
195 |
tgtcgcatattatttcatctggagggaactgtattattttaagcgtctttcatgggaaagatttgtat |
262 |
Q |
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| T |
7035938 |
tgtcacatattatttcatctggagggaactgtattattttaagtgtctttcatgggaaagatctgtat |
7035871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 29380425 - 29380357
Alignment:
| Q |
145 |
ttaggtgatttgctcaccagttggtttatatacattaaaatgggctgtagtgtcgcatattatttcatc |
213 |
Q |
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| T |
29380425 |
ttaggtggtttgctaaccagttggtttatgtacattaagatagactgtagtgtaacatattatttcatc |
29380357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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