View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5440_low_8 (Length: 255)

Name: NF5440_low_8
Description: NF5440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5440_low_8
NF5440_low_8
[»] chr1 (2 HSPs)
chr1 (1-240)||(38503787-38504026)
chr1 (208-240)||(6163324-6163356)
[»] chr6 (2 HSPs)
chr6 (144-238)||(8288562-8288655)
chr6 (208-240)||(14359366-14359398)
[»] chr7 (2 HSPs)
chr7 (118-179)||(25240159-25240220)
chr7 (202-238)||(19828681-19828717)
[»] chr8 (1 HSPs)
chr8 (208-240)||(28158928-28158960)
[»] chr3 (1 HSPs)
chr3 (208-240)||(4839902-4839934)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 38504026 - 38503787
Alignment:
Q  1 cttcgtccatttgatgttcagctgataggttagtgttttacgccgtgtttgatttgggctctttttggataaacaactaatttgctgctaacaacacaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38504026 cttcgtccatttgatgttcagctgataggttagtgttttacgccgtgtttgatttgggctctgtttggataaacaactaatttgctgctaacaacacaag 38503927  T
Q  101 cgtttattattagggatgtaaaagctagttacatgttagtttaattagttaggagtaagtcagtttaattggctatatataagccttaatgtacgcactg 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38503926 catttattattagggatgtaaaagctagttacatgttagtttaattagttaggagtaagtcagtttaattggctatatataagccttaatgtacgcactg 38503827  T
Q  201 cttgatgtaacaattctttcataataaatattattttcat 240  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  38503826 cttgatgtaacaattctctcatgataaatattattttcat 38503787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 6163324 - 6163356
Alignment:
Q  208 taacaattctttcataataaatattattttcat 240  Q
    ||||||||||||| |||||||||||||||||||    
T  6163324 taacaattctttcttaataaatattattttcat 6163356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 8288562 - 8288655
Alignment:
Q  144 attagttaggagtaagtcagtttaattggctatatataagccttaatgtacgcactgc-ttgatgtaacaattctttcataataaatattattttc 238  Q
    ||||||||||||| |||  || ||||||||||||||  ||||||||||||| || |   |||||||||||||||||||||| | ||||||||||||    
T  8288562 attagttaggagttagttggtctaattggctatata--agccttaatgtactcatttaattgatgtaacaattctttcatactcaatattattttc 8288655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 14359366 - 14359398
Alignment:
Q  208 taacaattctttcataataaatattattttcat 240  Q
    ||||||||||||| |||||||||||||||||||    
T  14359366 taacaattctttcttaataaatattattttcat 14359398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 25240159 - 25240220
Alignment:
Q  118 gtaaaagctagttacatgttagtttaattagttaggagtaagtcagtttaattggctatata 179  Q
    ||||||||||||||||| ||||||  || |||||||||| ||| ||| |||||| |||||||    
T  25240159 gtaaaagctagttacatattagttagatcagttaggagttagttagtctaattgactatata 25240220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 19828681 - 19828717
Alignment:
Q  202 ttgatgtaacaattctttcataataaatattattttc 238  Q
    |||||||||||||||||||||| | ||||||||||||    
T  19828681 ttgatgtaacaattctttcatactcaatattattttc 19828717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 28158960 - 28158928
Alignment:
Q  208 taacaattctttcataataaatattattttcat 240  Q
    ||||||||||||| |||||||||||||||||||    
T  28158960 taacaattctttcttaataaatattattttcat 28158928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 4839902 - 4839934
Alignment:
Q  208 taacaattctttcataataaatattattttcat 240  Q
    ||||||||||||| |||||||||||||||||||    
T  4839902 taacaattctttcttaataaatattattttcat 4839934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University