View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5441-Insertion-3 (Length: 390)
Name: NF5441-Insertion-3
Description: NF5441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5441-Insertion-3 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 7 - 390
Target Start/End: Original strand, 48649585 - 48649968
Alignment:
| Q |
7 |
atattactctgtctcttattatatctcagagatactgataagtagtaacgtgcacccaaatatttttgttagtgagtgatcatcatcattcatcaaattc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48649585 |
atattactctgtctcttattatatctcagagatactaataagtagtaacgtgcacccaaatatttttgttagtgagtgatcatcatcattcatcaaattc |
48649684 |
T |
|
| Q |
107 |
cttctttcttatagactgactagttagtattaattagtagcggccgggtgaaccaactgatatttagagagatcaatcaattagattgatgatgggcagc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48649685 |
cttctttcttatagactgactagttagtattaattagtagcagccgggtgaaccaactgatatttagagagatcaatcaaatagattgatgatgggcagc |
48649784 |
T |
|
| Q |
207 |
aacaatggatcaccatcacagtttggggacacaacgctgacaaaagtgttcgttggaggtcttgcctgggaaactccgaaagacacattaagagaacact |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48649785 |
aacaatggatcaccatcacagtttggggacacaacgctgacaaaagtgttcgttggaggtcttgcctgggaaactccgaaagacacattaagagaacact |
48649884 |
T |
|
| Q |
307 |
tcgaaaaatacggagacatccttgaagctgtcataatttctgataaggttaccggcagatccaaagggtatggatttgtaacat |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48649885 |
tcgaaaaatacggagacatccttgaagctgtcataatttctgataaggttaccggcagatccaaagggtatggatttgtaacat |
48649968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 43156206 - 43156156
Alignment:
| Q |
221 |
atcacagtttggggacacaacgctgacaaaagtgttcgttggaggtcttgc |
271 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
43156206 |
atcacagtttggggatacaacgctgactaaagtattcgttggaggtcttgc |
43156156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 20286341 - 20286291
Alignment:
| Q |
221 |
atcacagtttggggacacaacgctgacaaaagtgttcgttggaggtcttgc |
271 |
Q |
| |
|
|||| |||||||||| ||||||||||| ||||| || |||||||||||||| |
|
|
| T |
20286341 |
atcatagtttggggatacaacgctgactaaagtatttgttggaggtcttgc |
20286291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 21072970 - 21072920
Alignment:
| Q |
221 |
atcacagtttggggacacaacgctgacaaaagtgttcgttggaggtcttgc |
271 |
Q |
| |
|
|||| |||||||||| ||||||||||| ||||| || |||||||||||||| |
|
|
| T |
21072970 |
atcatagtttggggatacaacgctgactaaagtatttgttggaggtcttgc |
21072920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University