View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5441_low_1 (Length: 403)
Name: NF5441_low_1
Description: NF5441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5441_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 393
Target Start/End: Original strand, 35183753 - 35184133
Alignment:
| Q |
13 |
catcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttg |
112 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||| | ||| ||||||||||||| ||||||||||||||||| | ||||| || ||||| ||| |
|
|
| T |
35183753 |
catcataaaaaatagggaaaacagtctgtttcaattctgtatgatattcagcaatagtggccatctcttccaaacataatgttgactccgcataattttt |
35183852 |
T |
|
| Q |
113 |
agagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggca |
212 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||| || |
|
|
| T |
35183853 |
agagaagacaacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcg |
35183952 |
T |
|
| Q |
213 |
aaaataccctttctttttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaacacatcatatctatagcttt |
312 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35183953 |
aaaatacccttagttgttagatgagcatgaagatgatcaacaaaagtgctgcgggtgtcagcaccacggaaactgataaacacatcatatctatagcttt |
35184052 |
T |
|
| Q |
313 |
ggatgctattggaatcactggaagaacctatatctccctgacccaaatggattaaatcggaagatgtcaaacgactctgtg |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35184053 |
ggatgctattggaatcactggaagaacctatatctccctgacccaaatggatcaaatcggaagatgtcaaacgactctgtg |
35184133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 35105791 - 35106104
Alignment:
| Q |
1 |
tgagatgga-catcatcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaat |
99 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||||||||||||||| ||| | |||||||||||| |||||||||||||||||||||||| ||||| | |
|
|
| T |
35105791 |
tgagatggatcaacatcataaaaaacagggaaaacagtttgtttcaatcttttacggcattcagcaacagtagccatctcttccaaacaccatgttgact |
35105890 |
T |
|
| Q |
100 |
cggcatatctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatc |
199 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| | ||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35105891 |
cggcatatctttcagagaagacaacaatagaaacccgagaattttgaattgcttgaagaagttgcggcgaaagggattctcctttctcaagcctttgatc |
35105990 |
T |
|
| Q |
200 |
atccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaacacatca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||| | ||||||||||||||| || |
|
|
| T |
35105991 |
atccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcgacaaaagtgttgcgcgtgtctggacctctgaaactgataaacacgtcg |
35106090 |
T |
|
| Q |
300 |
tatctatagctttg |
313 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35106091 |
tatctatagctttg |
35106104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 14 - 340
Target Start/End: Original strand, 35177756 - 35178082
Alignment:
| Q |
14 |
atcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttga |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||| || || | | |||||| ||||||||||||| |||||||||||||| ||||| || |||||||||| |
|
|
| T |
35177756 |
atcataaaaaacagggaaaacagtttgtaagaaattgctacgacattcaacaatagtagccatttcttccaaacaccatgttgactcagcatatctttct |
35177855 |
T |
|
| Q |
114 |
gagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaa |
213 |
Q |
| |
|
||||||||||| ||||| || | |||| || |||||||||| |||||||| | |||||| ||||||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
35177856 |
gagaagacaacgatagatatccgtgaatttgcaattgcttgtcgaagttgcagcgaaaggcattctcctttctcgagccttttatcatccttgaacgcaa |
35177955 |
T |
|
| Q |
214 |
aaataccctttctttttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaacacatcatatctatagctttg |
313 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||| || ||| ||||||| || |
|
|
| T |
35177956 |
aaataccttttcttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtctggacctctgaaactgataaacacgtcgtatttatagctatg |
35178055 |
T |
|
| Q |
314 |
gatgctattggaatcactggaagaacc |
340 |
Q |
| |
|
| | | |||||||| |||||||||| |
|
|
| T |
35178056 |
cactccactggaatcaatggaagaacc |
35178082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 59 - 309
Target Start/End: Original strand, 35169510 - 35169760
Alignment:
| Q |
59 |
ttcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtaga |
158 |
Q |
| |
|
|||| |||| |||||||| |||||||||||||| ||||| || |||||||||| |||||||||||||||||||| | |||| || |||||||||| || |
|
|
| T |
35169510 |
ttcaacaatggtagccatttcttccaaacaccatgttgactcagcatatctttctgagaagacaacaatagaaatccgtgaatttgtaattgcttgtcga |
35169609 |
T |
|
| Q |
159 |
agttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcaacaaaag |
258 |
Q |
| |
|
|||||| ||||| | ||||||||||||| ||||||| ||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35169610 |
tgttgcgttgaaaagcattctcctttctctagccttttatcatccttgaaggcgaaaacaccctttctagttagatgagcataaagatgatcaacaaaag |
35169709 |
T |
|
| Q |
259 |
tgttgcgggtgtcagcaccacggaaactgataaacacatcatatctatagc |
309 |
Q |
| |
|
|||| ||||||||||| || | |||||||||||||||||| ||| |||||| |
|
|
| T |
35169710 |
tgttacgggtgtcagcgcctctgaaactgataaacacatcgtatttatagc |
35169760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 13 - 295
Target Start/End: Original strand, 35054891 - 35055173
Alignment:
| Q |
13 |
catcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttg |
112 |
Q |
| |
|
||||||||||| ||||||||| |||||||| || | ||| || |||||||| | ||||||||||||||||||||| ||||| ||||||||| ||| |
|
|
| T |
35054891 |
catcataaaaaatagggaaaactgtttgtttgaaatactcacaacaatcagcaattgcagccatctcttccaaacaccaagttgattcggcatatgtttt |
35054990 |
T |
|
| Q |
113 |
agagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggca |
212 |
Q |
| |
|
|||||||||||||||| |||||| ||| || |||||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
35054991 |
agagaagacaacaataaaaattcgcgaatttcgaattgcttgtagaagctgcggtgaaataaattctcctttctcaagacttttgtcatccttgaaggca |
35055090 |
T |
|
| Q |
213 |
aaaataccctttctttttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaacac |
295 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||| | ||||| ||||||| ||| | |||||||| ||||| |
|
|
| T |
35055091 |
aaaataccttttcttgttagatgagcataaagatgatcaacaaaactattgcgagtgtcaggacctctaaaactgatgaacac |
35055173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 35047022 - 35047128
Alignment:
| Q |
194 |
ttgatcatccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaac |
293 |
Q |
| |
|
|||||||||||||||| || | ||||| ||||| | |||||| ||| |||||||| | ||||||||||| ||||| | || | ||||||||||||| |
|
|
| T |
35047022 |
ttgatcatccttgaagacagagataccttttctgatgagatgatgatagagatgatcgatgaaagtgttgcgagtgtcggtgcctctgaaactgataaac |
35047121 |
T |
|
| Q |
294 |
acatcat |
300 |
Q |
| |
|
||||||| |
|
|
| T |
35047122 |
acatcat |
35047128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 65 - 328
Target Start/End: Complemental strand, 25484514 - 25484251
Alignment:
| Q |
65 |
aatagtagccatctcttccaaacaccacgttgaatcggcata-tctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttg |
163 |
Q |
| |
|
||||| |||||| || ||||||||||| |||||| ||||| |||||| ||||| ||||| |||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
25484514 |
aatagcagccatttcatccaaacaccatgttgaagaagcataatctttg-gagaaaacaacgatagaaatgcgtgactgttgaattgcttgtagaagttg |
25484416 |
T |
|
| Q |
164 |
cggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcaacaaaagtgttg |
263 |
Q |
| |
|
||||||| || ||||||||||| ||| | ||||||||||||| |||||||| ||||| || |||||||| || ||||| |||||||| | || |
|
|
| T |
25484415 |
gggtgaaatggcttctcctttctgtagctgcttgtcatccttgaaggtgaaaataccttttctattgagatgagcgtagagatggtcaacaaaggaatta |
25484316 |
T |
|
| Q |
264 |
cgggtgtcagcaccacggaaactgataaacacatcatatctatagctttggatgctattggaatc |
328 |
Q |
| |
|
|||||||||| ||| | ||||||||| |||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
25484315 |
cgggtgtcagaacctctgaaactgatgaacacatcgtatctatagctttggttgctattagaatc |
25484251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 310
Target Start/End: Complemental strand, 25636762 - 25636510
Alignment:
| Q |
58 |
attcagcaatagtagccatctcttccaaacaccacgttgaatcggcata-tctttgagagaagacaacaatagaaattcttgaactttgaattgcttgta |
156 |
Q |
| |
|
||||| |||||| |||||| || ||||||||||| ||||| ||||| |||||| |||||||||| ||||||| | ||| || |||||| || | |
|
|
| T |
25636762 |
attcatcaatagcagccatttcatccaaacaccatgttgatgaagcataatctttg-gagaagacaatgatagaaacccgcgaatctttaattgcctgca |
25636664 |
T |
|
| Q |
157 |
gaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcaacaaa |
256 |
Q |
| |
|
|||||| |||||| |||||| ||||||| |||| || ||||||||||||| ||||||| ||||| | ||||||||||| ||||| |||||||| |
|
|
| T |
25636663 |
aaagttggagtgaaatggattcgcctttctgaagcgatttgtcatccttgaaggtcgaaataccttttctagtgagatgagcatagagatggtcaacaaa |
25636564 |
T |
|
| Q |
257 |
agtgttgcgggtgtcagcaccacggaaactgataaacacatcatatctatagct |
310 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||| ||||||||| ||||||| |
|
|
| T |
25636563 |
ggtgttgcgggtgtcaggacctctgaaactgataaatacatcatatttatagct |
25636510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 145 - 320
Target Start/End: Original strand, 25436405 - 25436580
Alignment:
| Q |
145 |
gaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagcataaag |
244 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||||||| | ||| | ||||||||||||| ||||||||| ||||| |||||||| | || |
|
|
| T |
25436405 |
gaattgcttgtagaagttggggtgaaatggcttctcctttttggagctgcttgtcatccttgaaggtaaaaataccttttctaactagatgagagtggag |
25436504 |
T |
|
| Q |
245 |
atgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaacacatcatatctatagctttggatgcta |
320 |
Q |
| |
|
|||||||||||||| |||||||| |||| ||| | |||||||| |||||||| ||| ||| | ||| ||||||| |
|
|
| T |
25436505 |
atgatcaacaaaagaattgcgggtctcagaacctctaaaactgatgaacacatcgtatttatggttttcgatgcta |
25436580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 307
Target Start/End: Original strand, 25478885 - 25479049
Alignment:
| Q |
143 |
ttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagcataa |
242 |
Q |
| |
|
||||||||| ||| ||||||| |||||| |||||| |||||||| ||| || |||||| |||| | |||||||| ||||| | ||||||||||| |
|
|
| T |
25478885 |
ttgaattgcctgtcgaagttggagtgaaatggattcccctttctcgagctgctggtcatccatgaacgtgaaaataccttttctagtgagatgagcatag |
25478984 |
T |
|
| Q |
243 |
agatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaacacatcatatctata |
307 |
Q |
| |
|
||||| ||| |||| || || ||||||||| ||| | ||||||||||||||| || |||||||| |
|
|
| T |
25478985 |
agatggtcagcaaaggttttacgggtgtcaatacctctgaaactgataaacacgtcgtatctata |
25479049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 306
Target Start/End: Complemental strand, 25442570 - 25442322
Alignment:
| Q |
58 |
attcagcaatagtagccatctcttccaaacaccacgttgaatcggcata-tctttgagagaagacaacaatagaaattcttgaactttgaattgcttgta |
156 |
Q |
| |
|
||||| |||||| |||||| || ||||||||||| ||||| ||||| |||||| |||||||||| ||||||| | ||| || |||||| || | |
|
|
| T |
25442570 |
attcatcaatagcagccatttcatccaaacaccatgttgatgaagcataatctttg-gagaagacaatgatagaaacccgcgaatctttaattgcctgca |
25442472 |
T |
|
| Q |
157 |
gaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcaacaaa |
256 |
Q |
| |
|
|||||| |||||| |||||| ||||||| |||| || |||||||||||| | |||||||| ||||| | |||||| | || ||||| |||||||| |
|
|
| T |
25442471 |
aaagttggagtgaaatggattcgcctttctgaagcgatttgtcatccttgaagacgaaaataccttttctagtgagatgatcgtagagatggtcaacaaa |
25442372 |
T |
|
| Q |
257 |
agtgttgcgggtgtcagcaccacggaaactgataaacacatcatatctat |
306 |
Q |
| |
|
| ||||||||||||| ||| | |||||||| |||||||| ||||||| |
|
|
| T |
25442371 |
ggaattgcgggtgtcaggacctctaaaactgatgaacacatcgtatctat |
25442322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 197 - 319
Target Start/End: Original strand, 500322 - 500444
Alignment:
| Q |
197 |
atcatccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaacaca |
296 |
Q |
| |
|
||||||||| |||| |||||||| ||||| | ||||||||||| ||||||||||||||||||||||| ||||| | ||| | |||||||||||||||| |
|
|
| T |
500322 |
atcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcaacaaaagtgttgcgtgtgtcggaacctctgaaactgataaacaca |
500421 |
T |
|
| Q |
297 |
tcatatctatagctttggatgct |
319 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
500422 |
tcatatctatagctttggatgct |
500444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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