View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442-Insertion-1 (Length: 103)
Name: NF5442-Insertion-1
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442-Insertion-1 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0230 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 96; Significance: 1e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-47
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 23047145 - 23047240
Alignment:
| Q |
8 |
catactaccccacctttagcctttaatcttcaatacaaaaccaatttttgtataattgtttgtgtttgtgacatttctctctcttctcatcttctt |
103 |
Q |
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| T |
23047145 |
catactaccccacctttagcctttaatcttcaatacaaaaccaatttttgtataattgtttgtgtttgtgacatttctctctcttctcatcttctt |
23047240 |
T |
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Target: chr2; HSP #2
Raw Score: 96; E-Value: 1e-47
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 44098557 - 44098462
Alignment:
| Q |
8 |
catactaccccacctttagcctttaatcttcaatacaaaaccaatttttgtataattgtttgtgtttgtgacatttctctctcttctcatcttctt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44098557 |
catactaccccacctttagcctttaatcttcaatacaaaaccaatttttgtataattgtttgtgtttgtgacatttctctctcttctcatcttctt |
44098462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 116 - 73
Alignment:
| Q |
14 |
accccacctttagcctttaatcttcaatacaaaaccaatttttg |
57 |
Q |
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| T |
116 |
accccacctttagcctttattcttcaatccaaacccaatttttg |
73 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 18810906 - 18810949
Alignment:
| Q |
14 |
accccacctttagcctttaatcttcaatacaaaaccaatttttg |
57 |
Q |
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| T |
18810906 |
accccacctttagcctttattcttcaatccaaacccaatttttg |
18810949 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 1420173 - 1420092
Alignment:
| Q |
22 |
tttagcctttaatcttcaatacaaaaccaatttttgtataattgtttgtgtttgtgacatttctctctcttctcatcttctt |
103 |
Q |
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||||||||| | |||||||| |||| ||||||| ||| || || | | || ||||||||||||| |||||||||||||||| |
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| T |
1420173 |
tttagccttcattcttcaatccaaacccaatttctgtttatttttgtaggtctgtgacatttctccctcttctcatcttctt |
1420092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 28997691 - 28997609
Alignment:
| Q |
19 |
acctttagcctttaatcttcaatacaaaaccaatttttgtataattgtttgtgtttgtgacatttctctctcttctcatcttctt |
103 |
Q |
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|||||||||||||| |||||||| |||| | ||||| ||| || || |||| || || ||||||||| |||||||||||||||| |
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| T |
28997691 |
acctttagcctttattcttcaatccaaacctaatttctgtttatttttttgggtctg--acatttctccctcttctcatcttctt |
28997609 |
T |
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