View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5442-Insertion-2 (Length: 1028)

Name: NF5442-Insertion-2
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5442-Insertion-2
NF5442-Insertion-2
[»] chr1 (13 HSPs)
chr1 (234-1024)||(9168264-9169048)
chr1 (8-237)||(9169794-9170023)
chr1 (737-923)||(28664975-28665163)
chr1 (737-868)||(15629325-15629458)
chr1 (737-873)||(15630119-15630257)
chr1 (737-923)||(6696015-6696199)
chr1 (736-816)||(2071561-2071642)
chr1 (737-834)||(2073379-2073479)
chr1 (737-834)||(2076911-2077011)
chr1 (9-50)||(9161155-9161196)
chr1 (736-808)||(2075099-2075172)
chr1 (7-43)||(9119255-9119291)
chr1 (8-50)||(9155243-9155285)
[»] chr3 (10 HSPs)
chr3 (737-923)||(18088060-18088244)
chr3 (737-923)||(42531289-42531475)
chr3 (737-868)||(50294658-50294787)
chr3 (785-915)||(30057133-30057263)
chr3 (737-834)||(46691463-46691559)
chr3 (737-834)||(50297460-50297557)
chr3 (737-879)||(814354-814498)
chr3 (738-821)||(16462968-16463050)
chr3 (737-827)||(42530590-42530679)
chr3 (737-827)||(814260-814349)
[»] chr7 (14 HSPs)
chr7 (759-923)||(6840532-6840695)
chr7 (737-906)||(15614192-15614361)
chr7 (737-931)||(46964337-46964529)
chr7 (737-923)||(2628168-2628354)
chr7 (737-923)||(46962991-46963175)
chr7 (738-821)||(21814428-21814510)
chr7 (810-872)||(5763704-5763766)
chr7 (783-866)||(44337393-44337476)
chr7 (885-923)||(22554693-22554731)
chr7 (737-831)||(44339050-44339144)
chr7 (737-813)||(6841471-6841547)
chr7 (737-863)||(30867102-30867229)
chr7 (797-906)||(39349344-39349454)
chr7 (737-806)||(21811668-21811737)
[»] chr4 (8 HSPs)
chr4 (737-919)||(16543360-16543542)
chr4 (737-923)||(16871651-16871835)
chr4 (737-930)||(54146612-54146800)
chr4 (744-931)||(16869513-16869702)
chr4 (734-879)||(14458536-14458681)
chr4 (786-879)||(24131825-24131918)
chr4 (734-923)||(54148272-54148454)
chr4 (772-911)||(37945519-37945655)
[»] chr2 (9 HSPs)
chr2 (736-931)||(8985573-8985766)
chr2 (737-876)||(32291155-32291294)
chr2 (737-904)||(8986927-8987092)
chr2 (841-923)||(29408968-29409050)
chr2 (736-810)||(29409109-29409183)
chr2 (737-809)||(32276940-32277011)
chr2 (737-848)||(38583491-38583602)
chr2 (734-873)||(1172740-1172878)
chr2 (785-834)||(38588212-38588261)
[»] scaffold0511 (1 HSPs)
scaffold0511 (737-929)||(11187-11377)
[»] chr6 (13 HSPs)
chr6 (737-929)||(18792764-18792954)
chr6 (738-923)||(33423902-33424087)
chr6 (737-919)||(21862689-21862869)
chr6 (775-904)||(22868499-22868628)
chr6 (737-931)||(10740574-10740762)
chr6 (737-872)||(18984497-18984632)
chr6 (766-923)||(9290584-9290736)
chr6 (737-866)||(10741772-10741901)
chr6 (786-872)||(13166484-13166569)
chr6 (798-870)||(9365085-9365156)
chr6 (875-925)||(9363118-9363168)
chr6 (889-931)||(21858191-21858233)
chr6 (737-770)||(21858039-21858072)
[»] chr5 (6 HSPs)
chr5 (739-903)||(11343870-11344032)
chr5 (739-923)||(24137600-24137784)
chr5 (886-941)||(28432144-28432199)
chr5 (736-834)||(11320489-11320586)
chr5 (739-854)||(40784160-40784275)
chr5 (804-923)||(6643430-6643547)
[»] chr8 (10 HSPs)
chr8 (740-934)||(33199412-33199604)
chr8 (777-924)||(44374651-44374797)
chr8 (737-824)||(43615458-43615545)
chr8 (783-866)||(20241071-20241154)
chr8 (783-866)||(20251913-20251996)
chr8 (737-831)||(20242727-20242821)
chr8 (737-831)||(20250339-20250433)
chr8 (797-919)||(43516186-43516305)
chr8 (734-879)||(16578749-16578896)
chr8 (838-924)||(14699336-14699422)
[»] scaffold0002 (1 HSPs)
scaffold0002 (737-878)||(406215-406356)
[»] scaffold0325 (1 HSPs)
scaffold0325 (736-834)||(14540-14639)


Alignment Details
Target: chr1 (Bit Score: 643; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 234 - 1024
Target Start/End: Complemental strand, 9169048 - 9168264
Alignment:
Q  234 cctaatctcatgttccacttgtttaccaaatagagttgtgaagtttaaagcagtagattttgtgattccttgttggcggtcacctttggcagccattacc 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  9169048 cctaatctcatgttccacttgtttaccaaatagagttgtgaagtttaaagcactagattttgtgattccttgttggcggtcacctttggcagctattacc 9168949  T
Q  334 atagttaaacatttnnnnnnnttgttagcattaggtatggtttcacgaagtctagcaagcttattcacaccgtgagaaaatctcttttgcaaatctgcaa 433  Q
    ||||||||||||||       |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9168948 atagttaaacatttaaaaaatttgttagcattaggtaaggtttcacgaagtctagcaagcttattcacaccatgagaaaatctcttttgcaaatctgcaa 9168849  T
Q  434 acaatttcattgtgcatcatacgaaagagctcatatctttgaacaagtgtatttatcttcgattgttttaccacaattgtctccttgtggatgacttgaa 533  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9168848 acaatttcattgtgcatcatacgaaagagctcatatctttgaacaagtgtatttatcttcgattgttttaccacaattgtctccttgtggatgacttgta 9168749  T
Q  534 aggtatcctaaatcgctttagcattatctccatgcgaggaacgatagtactcttgattccaagggaagcaatgagtatgtttcacaccttcatatcatat 633  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9168748 aggtatcctaaatcgctttagcattatctccatgtgaggaacgatagtactcttgattccaagggaagcaatgagtatgtttcacaccttcatatcatat 9168649  T
Q  634 tgaactttcttagatttagcatctgtcaattgatcttctggcttattaaggacgagaatgttttcaatttcaacagaaggcacaaatgaccaattcaaaa 733  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  9168648 tgaactttcttagatttagcatctgtcaattgatcttctggcttattaaggacgggaatgttttcaatttcaatagaaggcacaaatgaccaattcaaaa 9168549  T
Q  734 atgtgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttg 833  Q
    | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |         |||||||||||||||||||||||||||||||    
T  9168548 aggtgttagataataaagtattgcacttaagctattgaacctttatatcagtaagttaca---------gttttattatatattctcttataacattttg 9168458  T
Q  834 tgatatcaagttattgatattttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaacatggtatcaga 933  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9168457 tgatatcaagttattgatattttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatatgtattgttaacatggtatcaga 9168358  T
Q  934 gcctagttgattgcacttctccccctat--attcttctgactcattgcacttct-ccnnnnnnnnnattcttctgatggattgcattgcacttc 1024  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||||| ||         ||||||||||||||||||||||||||||    
T  9168357 gcctagttgattgcacttctccccctattatttcttctgactcattgcacttctcccctttttttaattcttctgatggattgcattgcacttc 9168264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 9170023 - 9169794
Alignment:
Q  8 ggatgatggaagatgattgtgatatgtcaaaatatatatacttttatttttgttctatccatttgaattatttttgtattctgtgtgattgacccaatca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9170023 ggatgatggaagatgattgtgatatgtcaaaatatatatacttttatttttgttctatccatttgaattatttttgtattctgtgtgattgacccaatca 9169924  T
Q  108 ttttcttgattttaattttatttattgaaaactttcggtacaattcattataggatcaataaaatctctatgttatcaattttgtaatcatgttattggt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9169923 ttttcttgattttaattttatttattgaaaactttcggtacaattcattataggatcaataaaatctctatgttatcaattttgtaatcatgttattggt 9169824  T
Q  208 gcagagtatctactaatttgtcgttaccta 237  Q
    ||||||||||||||||||||||||||||||    
T  9169823 gcagagtatctactaatttgtcgttaccta 9169794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 737 - 923
Target Start/End: Original strand, 28664975 - 28665163
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctatt-ga----acctttatatcagtaagttatagtacattaggttttattatatattctcttataacattt 831  Q
    |||||||||||||||||||| |||||| ||||| ||    |||||||||| ||||||||| ||| |||||||||| |||||||||||||| |||||||||    
T  28664975 tgttagataataaagtattgagcttaaactattagattagacctttatattagtaagttagagtccattaggttt-attatatattctctcataacattt 28665073  T
Q  832 tgtgatatcaagttattgatatttta-tgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaaca 923  Q
    ||| |||| ||| ||||| |||| || |||||||||||||||| |||||   | ||||||||||||||| |||||||||||||||| ||||||    
T  28665074 tgtaatattaagctattgttattctaatgaaaccctagccgtcgttgtt---cctattctctctttctccattttgtatctgtattcttaaca 28665163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 737 - 868
Target Start/End: Complemental strand, 15629458 - 15629325
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    |||||||||||||| ||||| ||||||| ||||| |||||||||| ||||||||| ||| |||||| |||||||||||||||||||||||| |||||| |    
T  15629458 tgttagataataaaatattgggcttaagttattggacctttatattagtaagttagagttcattagattttattatatattctcttataaccttttgtaa 15629359  T
Q  837 tatcaagttattg--atattttatgaaaccctag 868  Q
    ||| ||| |||||  |||||||||||||||||||    
T  15629358 tattaagctattgaaatattttatgaaaccctag 15629325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 737 - 873
Target Start/End: Complemental strand, 15630257 - 15630119
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    ||||| |||||||||||||| ||||||  |||||  ||||||||| ||||||||| |||  |||||||||||||||||||||||||||||| |||||  |    
T  15630257 tgttaaataataaagtattgagcttaaattattgggcctttatattagtaagttagagtctattaggttttattatatattctcttataaccttttggaa 15630158  T
Q  837 tatcaagttattg--atattttatgaaaccctagccgtc 873  Q
    ||| |||||||||  ||||||||||||||||||||||||    
T  15630157 tattaagttattgaaatattttatgaaaccctagccgtc 15630119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 737 - 923
Target Start/End: Original strand, 6696015 - 6696199
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    |||||||||||||||||||  ||||||| |||||  | ||||||| ||||||||| ||| |||||| |||||||| ||||||||||||||| |||||| |    
T  6696015 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattaaatattctcttataaccttttgtaa 6696114  T
Q  837 tatcaagttattgata-ttttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaaca 923  Q
    | | ||| ||||| || | | |||||| | ||||||||   |||| || ||||||||||||||| ||||| |||||||||||||||||    
T  6696115 tgttaagctattgttagtctaatgaaatcgtagccgtc---gttgttcctattctctctttctccattttatatctgtattgttaaca 6696199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 736 - 816
Target Start/End: Complemental strand, 2071642 - 2071561
Alignment:
Q  736 gtgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagtta-tagtacattaggttttattatatat 816  Q
    ||||||||||||||| ||||| |||||||||||||  |||| |||| |||||||||  ||| |||||||||||| |||||||    
T  2071642 gtgttagataataaaatattgggcttaagctattgggccttaatattagtaagttagcagtccattaggttttagtatatat 2071561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 737 - 834
Target Start/End: Complemental strand, 2073479 - 2073379
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagtta-tagtacattaggtttta--ttatatattctcttataacattttg 833  Q
    |||||||||||||| ||||| ||||||||||||   |||| |||| |||||||||  ||| ||||||||||||   |||||||||||||||||| |||||    
T  2073479 tgttagataataaaatattgggcttaagctattagtccttaatattagtaagttagcagtccattaggttttagtatatatattctcttataactttttg 2073380  T
Q  834 t 834  Q
    |    
T  2073379 t 2073379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 737 - 834
Target Start/End: Complemental strand, 2077011 - 2076911
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagtta-tagtacattaggtttta--ttatatattctcttataacattttg 833  Q
    |||||||||||||| ||||| ||||||||||||   |||| |||| |||||||||  ||| ||||||||||||   |||||||||||||||||| |||||    
T  2077011 tgttagataataaaatattgggcttaagctattagtccttaatattagtaagttagcagtccattaggttttagtatatatattctcttataactttttg 2076912  T
Q  834 t 834  Q
    |    
T  2076911 t 2076911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 9161196 - 9161155
Alignment:
Q  9 gatgatggaagatgattgtgatatgtcaaaatatatatactt 50  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  9161196 gatgatggaagatgattgtgatatgtcaaaatatgtatactt 9161155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 736 - 808
Target Start/End: Complemental strand, 2075172 - 2075099
Alignment:
Q  736 gtgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagtta-tagtacattaggtttta 808  Q
    ||||||||||||||| ||||| |||||||||||||  |||| |||| |||||||||  ||| ||||||||||||    
T  2075172 gtgttagataataaaatattgggcttaagctattgggccttaatattagtaagttagcagtccattaggtttta 2075099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 9119255 - 9119291
Alignment:
Q  7 aggatgatggaagatgattgtgatatgtcaaaatata 43  Q
    ||||||||||||||||||||||| |||||||||||||    
T  9119255 aggatgatggaagatgattgtgacatgtcaaaatata 9119291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 9155285 - 9155243
Alignment:
Q  8 ggatgatggaagatgattgtgatatgtcaaaatatatatactt 50  Q
    |||||||||||||||||| |||||| ||||||||| |||||||    
T  9155285 ggatgatggaagatgattctgatatctcaaaatatgtatactt 9155243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 4e-41; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 737 - 923
Target Start/End: Complemental strand, 18088244 - 18088060
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    |||| ||||||||||||||| ||||||||||||   ||||||||| ||||||||| ||| |||||||||| |||||||||||||| |||||||||||| |    
T  18088244 tgttggataataaagtattgggcttaagctattaggcctttatattagtaagttagagtccattaggttt-attatatattctctcataacattttgtaa 18088146  T
Q  837 tatcaagttattgatattttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaaca 923  Q
    || |||| |||||| ||| ||||||||||||||||| ||||||   | |||||||||||||||||||||||||  ||||| ||||||    
T  18088145 tagcaagctattgacattctatgaaaccctagccgt-tttgttttccctattctctctttctctattttgtattggtatttttaaca 18088060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 737 - 923
Target Start/End: Original strand, 42531289 - 42531475
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    ||||||||||||||| |||| |||| || ||||| || ||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |||||| |    
T  42531289 tgttagataataaaggattgggcttgagttattggacttttatattagtaagttaaagttcattaggttttattatatattctcttataaccttttgtaa 42531388  T
Q  837 tatcaagttattgatattttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaaca 923  Q
    | | |||  ||||||||| |||||||||||||||  | |||||  ||  ||| |||||||||  ||||||||||||| |||||||||    
T  42531389 tgttaagccattgatattgtatgaaaccctagcctccgttgttattctcattttctctttcttgattttgtatctgttttgttaaca 42531475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 737 - 868
Target Start/End: Original strand, 50294658 - 50294787
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    |||||||| ||||||||||| ||||||| |||||| ||||||||| | ||||||| ||| ||||||||||||||||||||| |||||||||||||||| |    
T  50294658 tgttagatgataaagtattg-gcttaagttattga-cctttatattaataagttagagtccattaggttttattatatattatcttataacattttgtaa 50294755  T
Q  837 tatcaagttattgatattttatgaaaccctag 868  Q
    ||| |||| ||| ||||| |  ||||||||||    
T  50294756 tattaagtaattaatattattggaaaccctag 50294787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 785 - 915
Target Start/End: Original strand, 30057133 - 30057263
Alignment:
Q  785 taagttatagtacattaggttttattatatattctcttataacattttgtgatatcaagttattgatattttatgaaaccctagccgtctttgttggtca 884  Q
    ||||||| ||| |||||| |||| ||||||||||||||||||  |||||| || | ||| ||||||| || | ||||| ||||| ||||||||||| |||    
T  30057133 taagttagagtccattagattttgttatatattctcttataatcttttgtaatgttaagctattgatgttctctgaaatcctagtcgtctttgttgttca 30057232  T
Q  885 tattctctctttctctattttgtatctgtat 915  Q
    ||||||||  ||||||||||||||| |||||    
T  30057233 tattctcttgttctctattttgtatttgtat 30057263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 737 - 834
Target Start/End: Complemental strand, 46691559 - 46691463
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgt 834  Q
    ||||||||||||||||||||  |||||| ||||| |||||||||  ||||||||| ||| ||||| ||||||||||||||||||||||||| ||||||    
T  46691559 tgttagataataaagtattgaacttaagttattggacctttatactagtaagttagagtccatta-gttttattatatattctcttataaccttttgt 46691463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 737 - 834
Target Start/End: Original strand, 50297460 - 50297557
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgt 834  Q
    |||||||||||||||||||| ||||||| ||||||  |||||||| ||||||||| ||| ||||| |||||||||||| ||| |||||||| ||||||    
T  50297460 tgttagataataaagtattgtgcttaagttattgagtctttatattagtaagttagagttcattatgttttattatatgttcacttataaccttttgt 50297557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 737 - 879
Target Start/End: Complemental strand, 814498 - 814354
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttt--tattatatattctcttataacattttgt 834  Q
    ||||||||||||||||||||  |||||| |||||  | ||||||| ||||||||| ||| ||||||||||  |  |||||||||||||||||| | ||||    
T  814498 tgttagataataaagtattggacttaagttattgggcatttatattagtaagttagagtccattaggtttcgttatatatattctcttataacctcttgt 814399  T
Q  835 gatatcaagttattgatattttatgaaaccctagccgtctttgtt 879  Q
     || | ||| ||||| |||| |||||||| ||||| |||||||||    
T  814398 aatgttaagctattggtattctatgaaactctagctgtctttgtt 814354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 738 - 821
Target Start/End: Original strand, 16462968 - 16463050
Alignment:
Q  738 gttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctct 821  Q
    ||||||||||||||||||| ||||||| |||| | ||||||||| ||||||||| ||| ||||||| |||||||||||||||||    
T  16462968 gttagataataaagtattgagcttaagatattaagcctttatattagtaagttagagtccattagg-tttattatatattctct 16463050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 737 - 827
Target Start/End: Original strand, 42530590 - 42530679
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    ||||||||||||||||||||  ||| || || ||| | ||||||| ||||| ||| ||| |||||||||||||||||||||||||||||||    
T  42530590 tgttagataataaagtattggacttgagttagtga-cttttatattagtaaattaaagttcattaggttttattatatattctcttataac 42530679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 737 - 827
Target Start/End: Original strand, 814260 - 814349
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    ||||||||||||||||||||  |||||| |||||  | ||||||| ||||||||| ||| ||||||||||  || ||||||||||||||||    
T  814260 tgttagataataaagtattggacttaagttattgggcatttatattagtaagttagagtccattaggtttcgtt-tatattctcttataac 814349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 6e-40; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 759 - 923
Target Start/End: Complemental strand, 6840695 - 6840532
Alignment:
Q  759 cttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtgatatcaagttattgatattttat 858  Q
    |||||| |||||  ||||||||||||||||||| ||| | ||||||||||||||||||||| ||||||| |||||| || | ||| ||||||||||||||    
T  6840695 cttaagttattgggcctttatatcagtaagttagagtccgttaggttttattatatattcttttataaccttttgtaatgtaaagctattgatattttat 6840596  T
Q  859 gaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaaca 923  Q
    |||||| || |||||||||||  | ||||||||| |||||||||||||||||| |||||||||||    
T  6840595 gaaaccataaccgtctttgtt-cttatattctctgtttctctattttgtatctatattgttaaca 6840532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 737 - 906
Target Start/End: Complemental strand, 15614361 - 15614192
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    |||||||||||||||||||| ||||||| ||||| |||||||||| || |||||| ||| ||||||||||||||||||||||| ||||||| |||||| |    
T  15614361 tgttagataataaagtattgggcttaagttattggacctttatattagcaagttagagtccattaggttttattatatattcttttataaccttttgtaa 15614262  T
Q  837 tatcaagttattgatattttatgaaaccctagccgtctttgttggtcatattctctctttctctattttg 906  Q
    ||| ||| ||||| |||| |||||||||||||  |||||| | | |   ||| |||||||||||||||||    
T  15614261 tattaagctattgttattctatgaaaccctagttgtctttatcgttttgattatctctttctctattttg 15614192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 737 - 931
Target Start/End: Complemental strand, 46964529 - 46964337
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    ||||||||||||||| |||  ||||||| |||||  | ||||||| |||| |||| ||| |||||| |||||||||||||||||||||||| |||||| |    
T  46964529 tgttagataataaaggattaggcttaagttattgggcatttatattagtacgttagagtccattagattttattatatattctcttataactttttgtaa 46964430  T
Q  837 tatcaagttattgata-ttttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaacatggtatca 931  Q
    ||| ||| ||||| || | | |||||| | ||||||||   |||| || ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  46964429 tattaagctattgttagtctaatgaaatcgtagccgtc---gttgttcctattctctctttctccattttatatctgtattgttaacatggtatca 46964337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 737 - 923
Target Start/End: Complemental strand, 2628354 - 2628168
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    |||||||||||||||||||| ||||||| ||||||  |||||||| ||||||||| ||| ||||||||||||||||||||||||| ||||  |||||| |    
T  2628354 tgttagataataaagtattgagcttaagttattgagtctttatattagtaagttagagtccattaggttttattatatattctctcataattttttgtaa 2628255  T
Q  837 tatcaagttattgatattttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaaca 923  Q
    | | ||  |||||||||| |||||||||||| ||  | |||||  ||  ||| ||||||| |  ||||||||||||| |||||||||    
T  2628254 tgttaaactattgatattatatgaaaccctaacctccgttgttattctcattttctcttttttgattttgtatctgttttgttaaca 2628168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 737 - 923
Target Start/End: Complemental strand, 46963175 - 46962991
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    |||||||||||||||||||  ||||||| |||||  | ||||||| ||||||||| ||| |||||| |||||||| ||||||||||||||| |||||| |    
T  46963175 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattagatattctcttataaccttttgtaa 46963076  T
Q  837 tatcaagttattgatatt-ttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaaca 923  Q
    | | ||| ||||| |||| | |||||| | ||||||||   |||| || ||||||||||||||| ||||| |||||||||||||||||    
T  46963075 tgttaagctattgttattataatgaaatcgtagccgtc---gttgttcctattctctctttctccattttatatctgtattgttaaca 46962991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 738 - 821
Target Start/End: Original strand, 21814428 - 21814510
Alignment:
Q  738 gttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctct 821  Q
    ||||||||||||||||||| ||||||| |||| | ||||||||| ||||||||| ||| ||||||| |||||||||||||||||    
T  21814428 gttagataataaagtattgagcttaagatattaagcctttatattagtaagttagagtccattagg-tttattatatattctct 21814510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 810 - 872
Target Start/End: Original strand, 5763704 - 5763766
Alignment:
Q  810 tatatattctcttataacattttgtgatatcaagttattgatattttatgaaaccctagccgt 872  Q
    ||||||||||||| ||||||||||| |||| ||| |||||||||||||||| |||| ||||||    
T  5763704 tatatattctcttgtaacattttgtaatattaagatattgatattttatgacacccaagccgt 5763766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 783 - 866
Target Start/End: Original strand, 44337393 - 44337476
Alignment:
Q  783 agtaagttatagtacattaggttttattatatattctcttataacattttgtgatatcaagttattgatattttatgaaaccct 866  Q
    ||||||||| ||| | |||| |||||||||||||||||||||||||||| || ||   | | ||||| ||||||||||||||||    
T  44337393 agtaagttagagtccgttagattttattatatattctcttataacatttagtaatgcaatgctattgttattttatgaaaccct 44337476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 885 - 923
Target Start/End: Complemental strand, 22554731 - 22554693
Alignment:
Q  885 tattctctctttctctattttgtatctgtattgttaaca 923  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  22554731 tattctctctttgtctattttgtatctgtattgttaaca 22554693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 831
Target Start/End: Original strand, 44339050 - 44339144
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattt 831  Q
    ||||| |||||||| |||||   ||||| ||||| |||||||||| ||||||||| |||   |||  |||||||||||||||| |||||||||||    
T  44339050 tgttaaataataaaatattggatttaagttattggacctttatattagtaagttaaagtcttttaaattttattatatattctgttataacattt 44339144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 737 - 813
Target Start/End: Complemental strand, 6841547 - 6841471
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattata 813  Q
    |||||||||||||| ||| |  |||||| |||||  ||||||||||||||||||| ||| | |||| ||||||||||    
T  6841547 tgttagataataaaatatcggacttaagttattgggcctttatatcagtaagttagagtccgttagattttattata 6841471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 737 - 863
Target Start/End: Original strand, 30867102 - 30867229
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagtta---tagtacattaggttttattatatattctcttataacattttg 833  Q
    ||||||||||||||||||||  ||||| |||| || ||||| ||| | | |||||   |||| ||||||||||   ||||||||||||| | || |||||    
T  30867102 tgttagataataaagtattgaccttaaactatcgaccctttgtattacttagttaatatagttcattaggtttc--tatatattctcttgtgactttttg 30867199  T
Q  834 tgatatcaagttattgatattttatgaaac 863  Q
    | |||| |||||||||||||| ||| ||||    
T  30867200 taatattaagttattgatattctataaaac 30867229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 797 - 906
Target Start/End: Complemental strand, 39349454 - 39349344
Alignment:
Q  797 cattaggttttat-tatatattctcttataacattttgtgatatcaagttattgatattttatgaaaccctagccgtctttgttggtcatattctctctt 895  Q
    ||||||| ||||| ||||||||||| | |||| |||||| || |||||||| || |||| ||||||||||| |||  | |||||| ||  ||||||||||    
T  39349454 cattaggatttatatatatattctcctgtaaccttttgtaatgtcaagttaatgctattctatgaaacccttgcctccattgttgttcccattctctctt 39349355  T
Q  896 tctctattttg 906  Q
    | | |||||||    
T  39349354 tatttattttg 39349344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 737 - 806
Target Start/End: Original strand, 21811668 - 21811737
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttt 806  Q
    ||||||||||||| |||||| | ||||||||||   ||||||||| ||||||||| |||  |||||||||    
T  21811668 tgttagataataatgtattgggtttaagctattaggcctttatattagtaagttagagtcaattaggttt 21811737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 9e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 737 - 919
Target Start/End: Original strand, 16543360 - 16543542
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    ||||||||||||||||| ||  |||||| |||||  | ||||||| ||||||||| ||| ||||| |||||||||||||||||| | |||| |||||  |    
T  16543360 tgttagataataaagtaatggacttaagttattggccttttatattagtaagttagagttcattaagttttattatatattctcatgtaaccttttgcaa 16543459  T
Q  837 tatcaagttattgatattttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgtt 919  Q
    | | ||| |||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| ||||||| ||| |||||    
T  16543460 tgttaaggtattgatattctatgaaaccctagccgtctttgttgttcatattgtctctttctctaatttgtatttgttttgtt 16543542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 737 - 923
Target Start/End: Original strand, 16871651 - 16871835
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    |||||||||||||||||||  ||||||| |||||  | ||||||| ||||||||| ||| |||||| |||||||||||||| ||||||||| |||||| |    
T  16871651 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattatatattatcttataaccttttgtaa 16871750  T
Q  837 tatcaagttattgata-ttttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaaca 923  Q
    | | ||| ||||| || | | |||||||||||||||||   |||| || | ||||||||||||| |||||||||||||||||||||||    
T  16871751 tgttaagctattgttagtctaatgaaaccctagccgtc---gttgttcttgttctctctttctccattttgtatctgtattgttaaca 16871835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 737 - 930
Target Start/End: Original strand, 54146612 - 54146800
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctatt--gaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgt 834  Q
    |||||||||||||||||||  |||||| |||||  |  ||||||||| ||||||||| ||| |||||| ||| || ||||||||||| ||||||||||||    
T  54146612 tgttagataataaagtattaagcttaaactattaggcgcctttatattagtaagttagagtccattagattt-atcatatattctctcataacattttgt 54146710  T
Q  835 gatatcaagttattgatatttt-atgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaacatggtatc 930  Q
     |||| ||| |||||||||||| |||||| |||||||||||||||||    |  ||| |||||| ||||||||||  ||||||||||||||| ||||    
T  54146711 aatattaagctattgatattttaatgaaa-cctagccgtctttgttg----ttatctatctttccctattttgta--tgtattgttaacatgatatc 54146800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 744 - 931
Target Start/End: Original strand, 16869513 - 16869702
Alignment:
Q  744 taataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacatt----ttgtgatat 839  Q
    ||||||||||||| ||||||| |||||  | ||||||| ||||||||| ||| |||||| |||||||||||| ||||||||||| ||    |||| |  |    
T  16869513 taataaagtattgagcttaagttattgggcttttatattagtaagttagagttcattagattttattatatactctcttataacttttttgttgtaacgt 16869612  T
Q  840 caagttattgatatt-ttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaacatggtatca 931  Q
     ||| ||||| |||| | |||||| | ||||||||   |||| || ||||||||||||||| || || |||||||||||||||||||||||||    
T  16869613 taagctattgttattataatgaaatcgtagccgtc---gttgttcctattctctctttctccatgttatatctgtattgttaacatggtatca 16869702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 734 - 879
Target Start/End: Original strand, 14458536 - 14458681
Alignment:
Q  734 atgtgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagtta-tagtacattaggttttattatatattctcttataacatttt 832  Q
    ||||||||||| |||| | |||| |||||||||||||   |||||||| | ||||||| ||||  |||||||||||| ||| |||||||| |||| ||||    
T  14458536 atgtgttagatcataaggaattgggcttaagctattgtgtctttatattactaagttagtagtctattaggttttat-atacattctcttgtaacctttt 14458634  T
Q  833 gtgatatcaagttattgatattttatgaaaccctagccgtctttgtt 879  Q
    ||||||| |||||||||   || ||||||||||| ||||||||||||    
T  14458635 gtgatattaagttattggatttctatgaaacccttgccgtctttgtt 14458681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 786 - 879
Target Start/End: Original strand, 24131825 - 24131918
Alignment:
Q  786 aagttatagtacattaggttttattatatattctcttataacattttgtgatatcaagttattgatatttt-atgaaaccctagccgtctttgtt 879  Q
    |||||| ||| |||||||||||||||||| ||||||||||||||||||| || | || | ||| ||||||| |||||||||||| ||||||||||    
T  24131825 aagttagagtccattaggttttattatatgttctcttataacattttgtaatgttaaatcatt-atattttaatgaaaccctagtcgtctttgtt 24131918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 734 - 923
Target Start/End: Original strand, 54148272 - 54148454
Alignment:
Q  734 atgtgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttg 833  Q
    ||||||||||||| |||| |||| ||||||||||||   | ||||||| ||||||||| ||| || || | ||||||||||||||||| |||||| ||||    
T  54148272 atgtgttagataacaaagcattgagcttaagctattaggcttttatattagtaagttagagtccaata-gatttattatatattctctcataaca-tttg 54148369  T
Q  834 tgatatcaagttattgatatttt-atgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaaca 923  Q
    |  ||| ||| |||||||||||| | |||| ||| |||||||| ||||    |  ||| |||||||||||||||||  |||||||||||||    
T  54148370 tattattaagctattgatattttaacgaaatcctggccgtcttcgttg----ttatctatctttctctattttgta--tgtattgttaaca 54148454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 772 - 911
Target Start/End: Original strand, 37945519 - 37945655
Alignment:
Q  772 acctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtgatatcaagttattgatatttt-atgaaaccctagcc 870  Q
    |||||||||| ||||||||| ||| |||||  |||||||||||||||||||||||| |||||| || | ||   ||||||||||| ||||||| |||||     
T  37945519 acctttatattagtaagttagagtccattaaattttattatatattctcttataaccttttgtaatgttaatcaattgatattttaatgaaactctagct 37945618  T
Q  871 gtctttgttggtcatattctctctttctctattttgtatct 911  Q
    ||| || |||    |  ||||||||||| ||||||||||||    
T  37945619 gtcgttcttg----ttatctctctttctttattttgtatct 37945655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 9e-39; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 736 - 931
Target Start/End: Original strand, 8985573 - 8985766
Alignment:
Q  736 gtgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtg 835  Q
    ||||||||||||||||||||  ||||||| ||||| || ||||||| ||||||||| ||| |||||| |||||||||||||||||||||||| ||||||     
T  8985573 gtgttagataataaagtattaggcttaagttattggacatttatattagtaagttaaagtccattagattttattatatattctcttataaccttttgta 8985672  T
Q  836 atatcaagttattgata-ttttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaacatggtatca 931  Q
    || | ||| ||||| || | | |||||| | ||||||||   |||| || ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  8985673 atgttaagctattgttagtctaatgaaatcgtagccgtc---gttgttcctattctctctttctccattttatatctgtattgttaacatggtatca 8985766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 737 - 876
Target Start/End: Original strand, 32291155 - 32291294
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    |||||||||||||||||||| ||||||| |||||   |||||||| ||||||||| ||| ||||| | ||||||||||||||||||||||| |||||| |    
T  32291155 tgttagataataaagtattgagcttaagttattgtgtctttatattagtaagttagagtccattaagatttattatatattctcttataaccttttgtaa 32291254  T
Q  837 tatcaagttattgatattttatgaaaccctagccgtcttt 876  Q
    |   |||  ||||||||| ||||||||| |||||||||||    
T  32291255 tgaaaagcaattgatattctatgaaaccatagccgtcttt 32291294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 737 - 904
Target Start/End: Original strand, 8986927 - 8987092
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    |||||||||||||||||||  ||||||| |||||  | ||||||| ||||||||| ||| |||||  |||||||||||||||||||||||| |||||| |    
T  8986927 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattaaattttattatatattctcttataaccttttgtaa 8987026  T
Q  837 tatcaagttattgata-ttttatgaaaccctagccgtctttgttggtcatattctctctttctctattt 904  Q
    | | ||| ||||| || | | |||||| | ||||||||   |||| || ||||||||||||||| ||||    
T  8987027 tgttaagctattgttagtctaatgaaatcgtagccgtc---gttgttcctattctctctttctccattt 8987092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 841 - 923
Target Start/End: Complemental strand, 29409050 - 29408968
Alignment:
Q  841 aagttattgatattttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaaca 923  Q
    ||||||||  |||| ||||||| |||  |||||||||||| || ||||||||||||||||||||||||| |||||||||||||    
T  29409050 aagttattattattctatgaaatcctgaccgtctttgttgttcttattctctctttctctattttgtatatgtattgttaaca 29408968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 736 - 810
Target Start/End: Complemental strand, 29409183 - 29409109
Alignment:
Q  736 gtgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttatt 810  Q
    ||||||||||||||||||||| |||||||||||||| | ||||| | ||||||||| ||| |||||  |||||||    
T  29409183 gtgttagataataaagtattgtgcttaagctattgagcatttattttagtaagttagagtccattaaattttatt 29409109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 737 - 809
Target Start/End: Original strand, 32276940 - 32277011
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttat 809  Q
    ||||||||||| | |||||| ||||||| ||||| |||||||||| ||||||||| ||| |||||||||||||    
T  32276940 tgttagataatta-gtattgagcttaagttattggacctttatattagtaagttagagtccattaggttttat 32277011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 737 - 848
Target Start/End: Complemental strand, 38583602 - 38583491
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    |||||||||||||| ||||  ||||||  |||||  ||||||||| ||||||||| |   | |||| ||||||||||||||| |||||||| |||||| |    
T  38583602 tgttagataataaaatattaggcttaaattattgggcctttatattagtaagttagaacccgttagattttattatatattcgcttataaccttttgtaa 38583503  T
Q  837 tatcaagttatt 848  Q
    | |||| |||||    
T  38583502 tgtcaatttatt 38583491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 734 - 873
Target Start/End: Complemental strand, 1172878 - 1172740
Alignment:
Q  734 atgtgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttg 833  Q
    |||||||||||||||||||||||  ||||| |||||   |||| |||| | ||| ||| ||| ||||  | ||||||||||||||||| ||||||||||     
T  1172878 atgtgttagataataaagtattgtacttaaactattaggccttaatattaataaattagagtccatt-cgatttattatatattctctcataacatttta 1172780  T
Q  834 tgatatcaagttattgatattttatgaaaccctagccgtc 873  Q
    | ||||  |  ||||  |||| |||||||||||| |||||    
T  1172779 taatattgatctattagtattctatgaaaccctaaccgtc 1172740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 785 - 834
Target Start/End: Complemental strand, 38588261 - 38588212
Alignment:
Q  785 taagttatagtacattaggttttattatatattctcttataacattttgt 834  Q
    ||||||| ||||  ||||||||||||||||||| ||||||||| ||||||    
T  38588261 taagttagagtaggttaggttttattatatattttcttataaccttttgt 38588212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 737 - 929
Target Start/End: Original strand, 11187 - 11377
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    |||||||||||||| ||||| |||| || |||||| ||  ||||| ||||||||| ||| ||||| |||||||| |||||||||||||||| |||||| |    
T  11187 tgttagataataaactattgggcttcagttattgagccaatatattagtaagttaaagtgcattaagttttattgtatattctcttataaccttttgtaa 11286  T
Q  837 tatcaagttattgatattttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaacatggtat 929  Q
    | | ||  ||||||||||||||||||| |||||||| ||||||| |  |||  |||||||||||||||||||||| |||||||||||| ||||    
T  11287 tgttaaactattgatattttatgaaactctagccgtatttgttgtttttat--tctctttctctattttgtatctatattgttaacattgtat 11377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 3e-38; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 737 - 929
Target Start/End: Complemental strand, 18792954 - 18792764
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    |||||||||||||| ||||| |||| || |||||| ||  ||||| ||||||||| ||| ||||| |||||||| |||||||||||||||| |||||| |    
T  18792954 tgttagataataaactattgggcttcagttattgagccaatatattagtaagttaaagtgcattaagttttattgtatattctcttataaccttttgtaa 18792855  T
Q  837 tatcaagttattgatattttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaacatggtat 929  Q
    | | ||  ||||||||||||||||||| |||||||| ||||||| |  |||  |||||||||||||||||||||| |||||||||||| ||||    
T  18792854 tgttaaactattgatattttatgaaactctagccgtatttgttgtttttat--tctctttctctattttgtatctatattgttaacattgtat 18792764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 738 - 923
Target Start/End: Complemental strand, 33424087 - 33423902
Alignment:
Q  738 gttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtgat 837  Q
    ||||||||||||||||||| ||||||| |||||   |||||||| ||||||||| ||| ||||||||||||||||||||||||  |||||  ||||| ||    
T  33424087 gttagataataaagtattgagcttaagttattgcgtctttatattagtaagttaaagttcattaggttttattatatattctcccataaccctttgtaat 33423988  T
Q  838 atcaagttattgatattttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaaca 923  Q
     |  || ||||| |||| || |||||||||||||||||| ||| |    ||||||||||||||||||||||||| |||||||||||    
T  33423987 gttgagctattgttattctacgaaaccctagccgtctttattgttatcgttctctctttctctattttgtatctatattgttaaca 33423902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 737 - 919
Target Start/End: Original strand, 21862689 - 21862869
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    |||||||||||||||||||| |||||||||||||   |||||||| || |||||| ||| |||||||||||||||||||||||||  ||||  ||||| |    
T  21862689 tgttagataataaagtattgagcttaagctattgggtctttatattagcaagttagagtgcattaggttttattatatattctctagtaactctttgtaa 21862788  T
Q  837 tatcaagttattgatattttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgtt 919  Q
    ||| |||  |||| |||| |||||||||||||||  | || || ||||||  ||||| |||| ||||||||||||||||||||    
T  21862789 tattaagcaattgttattctatgaaaccctagccaccgttttttgtcata--ctctcgttctttattttgtatctgtattgtt 21862869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 775 - 904
Target Start/End: Original strand, 22868499 - 22868628
Alignment:
Q  775 tttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtgatatcaagttattgatattttatgaaaccctagccgtct 874  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |||||| || | | | |||||||||| ||||||||||||||| |||    
T  22868499 tttatattagtaagttagagtccattaggttttattatatattctcttataactttttgtaatgttatgctattgatattctatgaaaccctagccatct 22868598  T
Q  875 ttgttggtcatattctctctttctctattt 904  Q
    |||||| || |||||| ||| |||||||||    
T  22868599 ttgttgttcctattctttctctctctattt 22868628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 737 - 931
Target Start/End: Original strand, 10740574 - 10740762
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    |||||||||||||| ||||| ||||||| |||||   |||||||| || || ||| ||| ||||| |||| |||||||||||||| |||||||||||| |    
T  10740574 tgttagataataaaatattgggcttaagttattgt--ctttatattagcaaattagagtccattacgttt-attatatattctctcataacattttgtaa 10740670  T
Q  837 tatcaagttattgatatttta-tgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaacatggtatca 931  Q
    ||| |||||||||||||| || |||||||||||||  | ||| |  || |||||||||||||    ||||||||  || |||||||||||||||||    
T  10740671 tattaagttattgatattctattgaaaccctagcctccgttgctattcttattctctctttc----ttttgtatgagttttgttaacatggtatca 10740762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 737 - 872
Target Start/End: Original strand, 18984497 - 18984632
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    ||||| |||||||| ||||| |||||   |||||  ||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| ||| || |    
T  18984497 tgttaaataataaaatattgggcttagattattgggcctttatattagtaagttagagtacattatgttttattatatattctcttataacctttagtaa 18984596  T
Q  837 tatcaagttattgatattttatgaaaccctagccgt 872  Q
    |   | | ||||| ||||||||||||||||||||||    
T  18984597 tgcaatgctattgttattttatgaaaccctagccgt 18984632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 766 - 923
Target Start/End: Complemental strand, 9290736 - 9290584
Alignment:
Q  766 tattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtgatatcaagttattgatatt-ttatgaaacc 864  Q
    |||||| ||||||||| | ||||||| ||| ||||||||||||||||||||||||||||||| |||||| || | |    |||| |||| | ||||||||    
T  9290736 tattgagcctttatattaataagttagagtccattaggttttattatatattctcttataaccttttgtaatgttagacaattgttattctaatgaaacc 9290637  T
Q  865 ctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaaca 923  Q
    ||||||||| || |||      || ||||||||| ||||||||||||||||||||||||    
T  9290636 ctagccgtcattcttg------ttatctctttctttattttgtatctgtattgttaaca 9290584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 737 - 866
Target Start/End: Original strand, 10741772 - 10741901
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    |||||||||||||| ||||| ||||||| |||||   |||||||| || |||||| ||| |||||| ||| |||||||||||||| |||||||||||| |    
T  10741772 tgttagataataaaatattgggcttaagttattgggtctttatattagaaagttagagtccattagattt-attatatattctctcataacattttgtaa 10741870  T
Q  837 tatcaagttattgatatttta-tgaaaccct 866  Q
    ||| |||  ||||||||| || |||||||||    
T  10741871 tattaagcaattgatattctattgaaaccct 10741901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 786 - 872
Target Start/End: Original strand, 13166484 - 13166569
Alignment:
Q  786 aagttatagtacattaggttttattatatattctcttataacattttgtgatatcaagttattgatattttatgaaaccctagccgt 872  Q
    |||||| ||| ||||| || |||||||||||||||| ||||| |||| | || | |||  |||||||||||||||||||||||||||    
T  13166484 aagttagagttcattaagtgttattatatattctctcataacctttt-taatgttaagccattgatattttatgaaaccctagccgt 13166569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 798 - 870
Target Start/End: Complemental strand, 9365156 - 9365085
Alignment:
Q  798 attaggttttattatatattctcttataacattttgtgatatcaagttattgatattttatgaaaccctagcc 870  Q
    |||||||||||| |||||||||||| |||| |||||| || | |||||||||||||| || |||| |||||||    
T  9365156 attaggttttat-atatattctcttgtaaccttttgtaatgttaagttattgatattataggaaatcctagcc 9365085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 875 - 925
Target Start/End: Complemental strand, 9363168 - 9363118
Alignment:
Q  875 ttgttggtcatattctctctttctctattttgtatctgtattgttaacatg 925  Q
    |||||| || ||||||||||||| | ||||||||| |||||||||||||||    
T  9363168 ttgttgttcctattctctctttcacgattttgtatttgtattgttaacatg 9363118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 889 - 931
Target Start/End: Original strand, 21858191 - 21858233
Alignment:
Q  889 ctctctttctctattttgtatctgtattgttaacatggtatca 931  Q
    |||||||||| |||||||||||| ||| |||||||||||||||    
T  21858191 ctctctttctttattttgtatctatatagttaacatggtatca 21858233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 737 - 770
Target Start/End: Original strand, 21858039 - 21858072
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattg 770  Q
    |||||||||||||||||||| |||||||||||||    
T  21858039 tgttagataataaagtattgagcttaagctattg 21858072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 3e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 739 - 903
Target Start/End: Complemental strand, 11344032 - 11343870
Alignment:
Q  739 ttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacatttt-gtgat 837  Q
    |||||||||||||||||| ||||||  |||||    ||||||| ||||||||| ||| ||||| ||||||||||||| |||||||||||||||| || ||    
T  11344032 ttagataataaagtattgggcttaat-tattggctatttatattagtaagttagagt-cattaagttttattatatactctcttataacatttttgtaat 11343935  T
Q  838 atcaagttattgatattttatgaaaccctagccgtctttgttggtcatattctctctttctctatt 903  Q
     | ||| ||||||| |||||||||||| ||||||||||||||  |||| |||||||||||||||||    
T  11343934 gttaagctattgat-ttttatgaaaccttagccgtctttgttattcatgttctctctttctctatt 11343870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 739 - 923
Target Start/End: Original strand, 24137600 - 24137784
Alignment:
Q  739 ttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtgata 838  Q
    ||||| |||||||||||| |||| || |||||  |||||| |  ||||||||| |||  |||||||||||||||||||||||||||||| || ||| ||     
T  24137600 ttagacaataaagtattgagcttcagttattgggcctttacactagtaagttagagtctattaggttttattatatattctcttataaccttctgtaatg 24137699  T
Q  839 tcaagttattgatattttatgaaaccctagccgtctttgttggtcatat-tctctctttctctattttgtatctgtattgttaaca 923  Q
    | |||  ||||||||| ||||||| |||||||  | |||||  || | | | |||||||||||||||||||| ||| |||||||||    
T  24137700 ttaagcaattgatattatatgaaa-cctagcctccgttgttattcctctctttctctttctctattttgtatttgttttgttaaca 24137784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 886 - 941
Target Start/End: Complemental strand, 28432199 - 28432144
Alignment:
Q  886 attctctctttctctattttgtatctgtattgttaacatggtatcagagcctagtt 941  Q
    |||||||| ||||||||||||||||| ||||||||| ||||||| |||||| ||||    
T  28432199 attctctcattctctattttgtatctatattgttaatatggtatgagagccgagtt 28432144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 736 - 834
Target Start/End: Complemental strand, 11320586 - 11320489
Alignment:
Q  736 gtgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgt 834  Q
    |||||||||||||| |||||   |||||| |||||   |||||||| ||||||||  ||| |||||  |||||||||||||||||||||||| ||||||    
T  11320586 gtgttagataataatgtattagacttaagttattggctctttatattagtaagttggagtccattaa-ttttattatatattctcttataaccttttgt 11320489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 739 - 854
Target Start/End: Original strand, 40784160 - 40784275
Alignment:
Q  739 ttagataataaagtattgcgcttaagctattgaacctttatatcagtaagtt-atagtacattaggttttattatatattctcttataacattttgtgat 837  Q
    ||||||||||||||| ||  ||||| ||||||| ||||||||| | |||||| |||||  |||| ||||| | ||||| |||||| |||| |||||||||    
T  40784160 ttagataataaagtactgaacttaatctattgagcctttatattattaagttaatagtttattaagtttt-tcatatactctcttgtaaccttttgtgat 40784258  T
Q  838 atcaagttattgatatt 854  Q
     | || |||||||||||    
T  40784259 gttaaattattgatatt 40784275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 804 - 923
Target Start/End: Original strand, 6643430 - 6643547
Alignment:
Q  804 ttttattatatattctcttataacattttgtgatatcaagttattgatattttatgaaaccctagccgtctttgttggtcatattctctctttctctatt 903  Q
    ||||||||||||||||| |||||| ||||   || | ||| ||| | |||| ||||||||||||||| | ||| ||| |   |||||||| || ||||||    
T  6643430 ttttattatatattctcatataaccttttacaatgttaagctat-gttattctatgaaaccctagccat-tttattgtttccattctctcattttctatt 6643527  T
Q  904 ttgtatctgtattgttaaca 923  Q
    ||||||||||||||||||||    
T  6643528 ttgtatctgtattgttaaca 6643547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 7e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 740 - 934
Target Start/End: Original strand, 33199412 - 33199604
Alignment:
Q  740 tagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtaca-ttaggttttattatatattctcttataacattttgtgata 838  Q
    |||||||||||||||||  |||||| |||||| | ||||||| ||||||| | |||| | |||||||||||||||||||  |||||||  |||||| ||     
T  33199412 tagataataaagtattgatcttaagttattgagcttttatattagtaagtcagagtataattaggttttattatatatttccttataatcttttgtaatg 33199511  T
Q  839 tcaagttattgatattttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaacatggtatcagag 934  Q
    | ||||| ||||| || |||||||| |||||   ||  |||| ||  ||||||||||||| |||||||||| |||||| ||||||| |||||||||    
T  33199512 ttaagttgttgatgttctatgaaactctagc---ctccgttgttctcattctctctttctttattttgtatttgtattattaacatagtatcagag 33199604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 777 - 924
Target Start/End: Original strand, 44374651 - 44374797
Alignment:
Q  777 tatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtgatatcaagttattgatattttatgaaaccctagccgtcttt 876  Q
    ||||| ||| ||||| |||  |||| ||||||||||||||||| ||||||  |||| | || |  || |||||||||  |||||||   |||||||||||    
T  44374651 tatattagtgagttagagtctattatgttttattatatattcttttataatcttttttaatgtttagctattgatatgctatgaaatt-tagccgtcttt 44374749  T
Q  877 gttggtcatattctctctttctctattttgtatctgtattgttaacat 924  Q
    |||| ||||||| |||||||||||||||||||||| | ||| ||||||    
T  44374750 gttgttcatattatctctttctctattttgtatctattttgctaacat 44374797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 737 - 824
Target Start/End: Original strand, 43615458 - 43615545
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttat 824  Q
    |||||||||||||| |||||  ||| || |||||| | ||||||| ||||||||| ||| |||||| |||||||||||||| ||||||    
T  43615458 tgttagataataaaatattgaactttagttattgagcttttatattagtaagttagagtccattagattttattatatattttcttat 43615545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 783 - 866
Target Start/End: Original strand, 20241071 - 20241154
Alignment:
Q  783 agtaagttatagtacattaggttttattatatattctcttataacattttgtgatatcaagttattgatattttatgaaaccct 866  Q
    ||||||||| ||| | |||| |||||||||||||||||||||||||||| || ||   | | ||||| ||||||||||||||||    
T  20241071 agtaagttagagtccgttagattttattatatattctcttataacatttagtaatgcaatgctattgttattttatgaaaccct 20241154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 783 - 866
Target Start/End: Complemental strand, 20251996 - 20251913
Alignment:
Q  783 agtaagttatagtacattaggttttattatatattctcttataacattttgtgatatcaagttattgatattttatgaaaccct 866  Q
    ||||||||| ||| | |||| |||||||||||||||||||||||||||| || ||   | | ||||| ||||||||||||||||    
T  20251996 agtaagttagagtccgttagattttattatatattctcttataacatttagtaatgcaatgctattgttattttatgaaaccct 20251913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 831
Target Start/End: Original strand, 20242727 - 20242821
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattt 831  Q
    ||||| |||||||| |||||   ||||| ||||| |||||||||| ||||||||| |||   |||  |||||||||||||||| |||||||||||    
T  20242727 tgttaaataataaaatattggatttaagttattggacctttatattagtaagttaaagtcttttaaattttattatatattctgttataacattt 20242821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 831
Target Start/End: Complemental strand, 20250433 - 20250339
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattt 831  Q
    ||||| |||||||| |||||   ||||| ||||| |||||||||| ||||||||| |||   |||  |||||||||||||||| |||||||||||    
T  20250433 tgttaaataataaaatattggatttaagttattggacctttatattagtaagttaaagtcttttaaattttattatatattctgttataacattt 20250339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 797 - 919
Target Start/End: Original strand, 43516186 - 43516305
Alignment:
Q  797 cattaggttttattatatattctcttataacattttgtgatatcaagttattgatattttat-gaaaccctagccgtctttgttggtcatattctctctt 895  Q
    ||||||||||||| |||||||||||  |||| || ||| || | ||| || || |||| ||| ||||||||||||||| |||||   | |||||||| ||    
T  43516186 cattaggttttat-atatattctctagtaaccttatgtaatgttaagctaatggtattctattgaaaccctagccgtcattgtt---cctattctctgtt 43516281  T
Q  896 tctctattttgtatctgtattgtt 919  Q
    |||||||||||||| |||||||||    
T  43516282 tctctattttgtatatgtattgtt 43516305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 734 - 879
Target Start/End: Complemental strand, 16578896 - 16578749
Alignment:
Q  734 atgtgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagtta-tagtacattaggttttattatatattctcttataacatttt 832  Q
    ||||||||||||||||||||||   ||| | | ||||||||||||||| | |||||||  ||| |||||| ||||| |||||||||| || |||| ||||    
T  16578896 atgtgttagataataaagtattaatcttcaaccattgaacctttatattactaagttagcagtccattagatttta-tatatattctattgtaacctttt 16578798  T
Q  833 gtgatatcaagt-tattgatatttta-tgaaaccctagccgtctttgtt 879  Q
    || || ||   | ||||| ||||||| ||||||||||| ||||||||||    
T  16578797 gtaatgtcttttatattgctattttattgaaaccctagtcgtctttgtt 16578749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 838 - 924
Target Start/End: Complemental strand, 14699422 - 14699336
Alignment:
Q  838 atcaagttattgatattttatgaaaccctagccgtctttgttggtcatattctctctttctctattttgtatctgtattgttaacat 924  Q
    |||||| |||| ||||||||| |||||||| |   | || ||| || ||||||||||||||||||||||||| |||||  |||||||    
T  14699422 atcaagatattaatattttataaaaccctaacttacattattgttcctattctctctttctctattttgtatttgtatcattaacat 14699336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 737 - 878
Target Start/End: Complemental strand, 406356 - 406215
Alignment:
Q  737 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctcttataacattttgtga 836  Q
    |||||||||||||||||||  | ||||| |||||  ||||||||| || |||||| ||| | ||| ||||||||||||||||| ||||||| |||| | |    
T  406356 tgttagataataaagtattaggtttaagttattgggcctttatattagcaagttagagtcctttaagttttattatatattctattataaccttttctaa 406257  T
Q  837 tatcaagttattgatattttatgaaaccctagccgtctttgt 878  Q
    ||| ||||||||| || ||  | ||| ||||||| |||||||    
T  406256 tattaagttattgttaattatttaaatcctagccatctttgt 406215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 736 - 834
Target Start/End: Complemental strand, 14639 - 14540
Alignment:
Q  736 gtgttagataataaagtattgcgcttaagctattgaacctttat-atcagtaagtt-atagtacattaggttttattatatattctcttataacattttg 833  Q
    ||||||||||||||||||||| |||||||||||||  ||||||| || | |||||| |||||   |||||||||| |||||||||||||||||| |||||    
T  14639 gtgttagataataaagtattgggcttaagctattgggcctttatcattactaagttcatagtctgttaggtttta-tatatattctcttataaccttttg 14541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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