View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5442-Insertion-3 (Length: 911)

Name: NF5442-Insertion-3
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5442-Insertion-3
NF5442-Insertion-3
[»] chr1 (4 HSPs)
chr1 (10-911)||(50764480-50765383)
chr1 (16-91)||(38651521-38651595)
chr1 (19-81)||(40304169-40304231)
chr1 (16-89)||(52013783-52013855)
[»] chr5 (5 HSPs)
chr5 (16-93)||(26516180-26516256)
chr5 (16-94)||(20982247-20982324)
chr5 (13-94)||(32172534-32172614)
chr5 (16-80)||(7096239-7096303)
chr5 (13-50)||(29115322-29115359)
[»] chr8 (11 HSPs)
chr8 (15-98)||(2107437-2107519)
chr8 (20-94)||(28769455-28769528)
chr8 (16-80)||(10727091-10727155)
chr8 (16-92)||(31884477-31884552)
chr8 (16-80)||(39392773-39392837)
chr8 (20-94)||(29592648-29592721)
chr8 (13-94)||(31875668-31875748)
chr8 (16-80)||(8060556-8060620)
chr8 (16-101)||(3645928-3646012)
chr8 (21-54)||(4521737-4521770)
chr8 (16-49)||(5290566-5290599)
[»] chr6 (2 HSPs)
chr6 (16-94)||(6963168-6963245)
chr6 (17-94)||(32975859-32975935)
[»] chr4 (4 HSPs)
chr4 (13-92)||(43932316-43932394)
chr4 (16-101)||(485955-486039)
chr4 (16-59)||(9843778-9843821)
chr4 (13-94)||(24193466-24193546)
[»] chr2 (2 HSPs)
chr2 (16-94)||(11393478-11393555)
chr2 (16-94)||(11410139-11410216)
[»] chr7 (2 HSPs)
chr7 (16-99)||(2223025-2223106)
chr7 (16-93)||(28702639-28702718)
[»] chr3 (4 HSPs)
chr3 (43-94)||(23530325-23530375)
chr3 (16-94)||(43116540-43116617)
chr3 (19-88)||(28842972-28843041)
chr3 (16-53)||(41028963-41029000)


Alignment Details
Target: chr1 (Bit Score: 856; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 856; E-Value: 0
Query Start/End: Original strand, 10 - 911
Target Start/End: Original strand, 50764480 - 50765383
Alignment:
Q  10 tttttgtagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaacatggcttatgttgata 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50764480 tttttgtagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaacatggcttatgttgata 50764579  T
Q  110 aacagaaaatgataacattccagggaagaccattaccatcttgaaaacctgctttcccatatgcatctactaagatattataagaggctcgatctggttc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50764580 aacagaaaatgataacattccagggaagaccattaccatcttgaaaacctgctttcccatatgcatctactaagatattataagaggctcgatctggttc 50764679  T
Q  210 acatcccatgtgctgcattaatgaaaaaatttctgctgctccataaggaaagcctgcacgactgttcccggaagagaaat-atgatttttgttttctcta 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  50764680 acatcccatgtgctgcattaatgaaaaaatttctgctgctccataaggaaagcctgcacgactgttccgggaagagaaattatgatttttgttttctcta 50764779  T
Q  309 ggtatataaaccaatagatcaaagggataacacattaatcaatcaaaaaggcatttatactgtcgtatataacaacctgtaagcttccataagggcatta 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50764780 ggtatataaaccaatagatcaaagggataacacattaatcaatcaagaaggcatttatactgtcgtatataacaacctgtaagcttccataagggcatta 50764879  T
Q  409 taagcatatacatcaggttcaagtcctgcttcttgcatctgctcaaatatttcttctgctttctcacataatccctctcttgcaaatgcattcactagag 508  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50764880 taagcatatacatcaggttcaagtccagcttcttgcatctgctcaaatatttcttctgctttctcacataatccctctcttgcaaatgcattcactagag 50764979  T
Q  509 cagtatatgtgcaaatattaggtttgcacttttggcttaacatttcatcgaacacttttaaggccatgtaggatttaccggcctgcataaaattcaaatt 608  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50764980 cagtatatgtgcaaatattaggtttgcatttttggcttaacatttcatcgaacacttttaaggccatgtaggatttaccggcctgcataaaattcaaatt 50765079  T
Q  609 tcaattccattaacataattgtgtctgtgctgtgaaacttttttatgtgctatgcatgtgggattcaacatactgaatatgctttataaattaagaaatt 708  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50765080 tcaattccattaacataattgtgtctgtgctgtgaaactttcctatgtgctatgcatgtgggattcaacatactgaatatgctttataaattaagaaatt 50765179  T
Q  709 atttatcctaaatttaaaggtcattgctctcgacattgactccaccatggcactaaattataacaaaaaatggaggcaagtttggtcctggaggctcgcc 808  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50765180 atttatcctaaatttaaaggtcattgctctcgacattgactccaccatggtactaaattatgacaaaaaatggaggcaagtttggtcctggaggctcgcc 50765279  T
Q  809 ggggcagagaaacccccaatgcagtcatcacattggtagcaggattc-aacttaggtctagtgggacttgagttgaatctttaccgactagaccaactta 907  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50765280 ggggcagagaaacccccaatgcagtcatcacattggtagcaggattcaaacttaggtctagtgggacttgagttgaatctttaccgactagaccaactta 50765379  T
Q  908 catc 911  Q
    ||||    
T  50765380 catc 50765383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 38651521 - 38651595
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaa 91  Q
    ||||| ||||||||||||||||| ||  ||||||| ||| |||||||||||||| ||||| ||| |||||||||||    
T  38651521 tagaattagcttatacataagcacttacatgataaacacgtattctataaatgcataatt-agtctgtttatccaa 38651595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 40304169 - 40304231
Alignment:
Q  19 aaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagttt 81  Q
    ||||||||||||| ||||||||  |||||||| ||| ||  |||||| |||||||||||||||    
T  40304169 aaatagcttatacctaagcaataatatgataaacacttacactataagtgcttaattaagttt 40304231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 52013855 - 52013783
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatcc 89  Q
    ||||||||||||||||||||||| ||  |||||||| |  ||| ||||||| | ||||||||| ||||||||||    
T  52013855 tagaaatagcttatacataagcatttacatgataagtatttatgctataaacgtttaattaag-ttgtttatcc 52013783  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 26516256 - 26516180
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaac 93  Q
    ||||||||||||||||||||||| || |||||||||| | ||| ||||||  ||||||||||| ||||||||||||||    
T  26516256 tagaaatagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaag-ttgtttatccaaac 26516180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 20982247 - 20982324
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 94  Q
    ||||||||||||||||||||||| || |||||||||||| ||| ||||||   |||||| ||| |||||||||||||||    
T  20982247 tagaaatagcttatacataagcacttatatgataagcacttatgctataagcacttaatgaag-ttgtttatccaaaca 20982324  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 32172614 - 32172534
Alignment:
Q  13 ttgtagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 94  Q
    |||||||||||| ||||||||||||  ||||||||||||| | ||| || |||  ||||||||| | |||||||||||||||    
T  32172614 ttgtagaaatagtttatacataagctcttgtatgataagcgcttatgctgtaagcgcttaattatg-ttgtttatccaaaca 32172534  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 7096239 - 7096303
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtt 80  Q
    ||||||||||||||||||||||| ||||||||| |   ||||| ||||||||| ||||| |||||    
T  7096239 tagaaatagcttatacataagcacttgtatgattaatgcatatgctataaatgtttaatcaagtt 7096303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 29115322 - 29115359
Alignment:
Q  13 ttgtagaaatagcttatacataagcaattgtatgataa 50  Q
    |||||||||||||||||||||||||| || ||||||||    
T  29115322 ttgtagaaatagcttatacataagcacttttatgataa 29115359  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 2107437 - 2107519
Alignment:
Q  15 gtagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaacatggc 98  Q
    ||||||||| |||||||||||| | || |||||||||| ||||  ||||||| ||||||||||| ||||||||||||| |||||    
T  2107437 gtagaaataacttatacataagaacttatatgataagcgcataagctataaacgcttaattaag-ttgtttatccaaaaatggc 2107519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 28769455 - 28769528
Alignment:
Q  20 aatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 94  Q
    ||||||||||||||||||| || |||||||||||| ||| |||||||||||| ||| ||  ||||||||||||||    
T  28769455 aatagcttatacataagcatttatatgataagcacttatgctataaatgcttgatttag-ctgtttatccaaaca 28769528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 10727155 - 10727091
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtt 80  Q
    |||||||||||||| |||||||| || |||||| | ||| ||| |||||||||||||||||||||    
T  10727155 tagaaatagcttatgcataagcacttatatgatgaacacttatgctataaatgcttaattaagtt 10727091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 31884552 - 31884477
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaa 92  Q
    |||||||| |||||||||| ||| ||||||||||||| | ||| |||||| ||||||||| || |||||||||||||    
T  31884552 tagaaataacttatacatatgcacttgtatgataagcgcttatgctataagtgcttaattgag-ttgtttatccaaa 31884477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 39392773 - 39392837
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtt 80  Q
    ||||||||| |||||||||  || || |||||||||||| ||| |||||||||||||||||||||    
T  39392773 tagaaatagtttatacatagccacttatatgataagcacttatgctataaatgcttaattaagtt 39392837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 29592648 - 29592721
Alignment:
Q  20 aatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 94  Q
    ||||||||||||| ||||| || ||||||||| || ||| |||||||||| ||| |||| |||||||||||||||    
T  29592648 aatagcttatacaaaagcacttatatgataagaacttatgctataaatgcataactaag-ttgtttatccaaaca 29592721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 31875668 - 31875748
Alignment:
Q  13 ttgtagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 94  Q
    ||||| |||||||||||| ||||||| || |||||||||| | ||| ||||||| |||| |||||| |||| ||||||||||    
T  31875668 ttgtataaatagcttatagataagcacttatatgataagcgcttatgctataaacgcttcattaag-ttgtctatccaaaca 31875748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 8060620 - 8060556
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtt 80  Q
    ||||||||||||||| ||||||| || ||  |||||| | ||| |||||||||||||||||||||    
T  8060620 tagaaatagcttatatataagcacttataccataagctcgtatgctataaatgcttaattaagtt 8060556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 3645928 - 3646012
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaacatggctta 101  Q
    ||||||||||||||||| ||||| || |||||||| ||| ||| |||||||   ||||| ||| |||| |||| ||||||||||||    
T  3645928 tagaaatagcttatacacaagcacttatatgataaacacttatgctataaacatttaatcaag-ttgtctatcaaaacatggctta 3646012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 4521770 - 4521737
Alignment:
Q  21 atagcttatacataagcaattgtatgataagcac 54  Q
    |||||||||||||||||||||| |||||||||||    
T  4521770 atagcttatacataagcaattgcatgataagcac 4521737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 5290599 - 5290566
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgata 49  Q
    ||||||||||||||||||||||| ||||||||||    
T  5290599 tagaaatagcttatacataagcacttgtatgata 5290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 6963168 - 6963245
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 94  Q
    |||||||||||||||||||||||| | |||||||||||   || |||||| ||||||||| || |||||||||||||||    
T  6963168 tagaaatagcttatacataagcaaatatatgataagcatccatactataagtgcttaatttag-ttgtttatccaaaca 6963245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 32975935 - 32975859
Alignment:
Q  17 agaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 94  Q
    ||||||| ||||||||||| || || ||||| |||| | ||| ||||||| ||||||||||| ||||||||| |||||    
T  32975935 agaaataacttatacataaacacttatatgagaagcgcttatgctataaacgcttaattaag-ttgtttatctaaaca 32975859  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 43932394 - 43932316
Alignment:
Q  13 ttgtagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaa 92  Q
    ||||| |||||| ||||||||||||| ||||||||||| ||| |||  ||||| ||||||||||| | ||||||||||||    
T  43932394 ttgtaaaaatagtttatacataagcacttgtatgataaacacttatgttataagtgcttaattaa-tctgtttatccaaa 43932316  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 486039 - 485955
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaacatggctta 101  Q
    |||||||||| |||||||||||| || |||||||||| | ||| ||||||  ||||||||||| | ||| ||||||||| ||||||    
T  486039 tagaaatagcatatacataagcacttttatgataagcgcttatgctataagcgcttaattaag-tagttcatccaaacagggctta 485955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 9843778 - 9843821
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagcacatatt 59  Q
    ||||||||||||||||||||||| || |||||||||||| ||||    
T  9843778 tagaaatagcttatacataagcagttatatgataagcacttatt 9843821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 24193546 - 24193466
Alignment:
Q  13 ttgtagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 94  Q
    ||||| ||||| |||||||||||| | || ||||||||||   ||| |||||| |||| ||||||| |||||||||||||||    
T  24193546 ttgtaaaaataacttatacataagtacttatatgataagcgtttatgctataagtgctcaattaag-ttgtttatccaaaca 24193466  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 11393478 - 11393555
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 94  Q
    ||||||||||||||| ||||||| || |||||||| ||| | | |||||| ||||||||||||  ||||||||||||||    
T  11393478 tagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaag-ctgtttatccaaaca 11393555  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 11410139 - 11410216
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 94  Q
    ||||||||||||||| ||||||| || |||||||| ||| | | |||||| ||||||||||||  ||||||||||||||    
T  11410139 tagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaag-ctgtttatccaaaca 11410216  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 2223106 - 2223025
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaacatggct 99  Q
    |||||||||||||||||||| || || || |||||| |  ||| |||||||||| ||||||| || ||||||||||||||||||    
T  2223106 tagaaatagcttatacataaacacttatacgataag-atttatgctataaatgcctaattaaatt-gtttatccaaacatggct 2223025  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 28702718 - 28702639
Alignment:
Q  16 tagaaatagcttatacataagcaat---tgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaac 93  Q
    ||||||||||||||||||||  |||   |||||| || |||| ||| |||||| |||||||||||| ||||||||||||||    
T  28702718 tagaaatagcttatacataaaaaatacttgtatggtacgcacttatgctataagtgcttaattaag-ttgtttatccaaac 28702639  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 23530325 - 23530375
Alignment:
Q  43 tatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 94  Q
    |||||||||  ||||||||||||||||||||||||| | |||||||||||||    
T  23530325 tatgataagtgcatattctataaatgcttaattaag-tggtttatccaaaca 23530375  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 43116540 - 43116617
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 94  Q
    ||||||||||||| |||||| || ||||||||||| ||  ||| |||||||  || ||||||| |||||||||||||||    
T  43116540 tagaaatagcttacacataaacacttgtatgataaacatttatgctataaacactaaattaag-ttgtttatccaaaca 43116617  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 28842972 - 28843041
Alignment:
Q  19 aaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatc 88  Q
    |||||||||||||||||||| || |||||||||| | |||  ||||| ||||||||| |  |||||||||    
T  28842972 aaatagcttatacataagcacttatatgataagcgcttatgatataagtgcttaatttaaattgtttatc 28843041  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 41028963 - 41029000
Alignment:
Q  16 tagaaatagcttatacataagcaattgtatgataagca 53  Q
    ||||||||||||||||||||||| || |||||||||||    
T  41028963 tagaaatagcttatacataagcacttatatgataagca 41029000  T

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