View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442-Insertion-4 (Length: 765)
Name: NF5442-Insertion-4
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442-Insertion-4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 549; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 121 - 765
Target Start/End: Complemental strand, 6513104 - 6512461
Alignment:
| Q |
121 |
tttctaattcagatgtaaatgtaggaatttaataaagagattactcmaactttggaaatttattaattcttaccccttttctagcacaaaatccacggaa |
220 |
Q |
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| T |
6513104 |
tttctaattcagatgtaaatgtaggaatttaata--gagattactcaaactttggaaatttattaattcttaccccttttctagcacaaaatccacggaa |
6513007 |
T |
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| Q |
221 |
gggaagaaaaaattggtgcaattcttcatgagttggtggacgaccatgtttaggaacatcgacaatatgatcacctgcattaaaccaaattcaaaatttc |
320 |
Q |
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| T |
6513006 |
gggaagaaaaaattggtgcaattcttcatgagttggtggacgaccatgtttaggaacatcgacaatatgatcacctgcattaaaccaaattcaaaatttc |
6512907 |
T |
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| Q |
321 |
ataatgcaaataa-ttggttgcatgatcccatacacattatcaattctatattcataaatagttttatttaaattcaaattatagccatacatcatatca |
419 |
Q |
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| T |
6512906 |
ataatacaaataatttggttgcatgatcccatacacattatcaattctatattcataaatagttttatttaaattcaaattatagccatacatcatatca |
6512807 |
T |
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| Q |
420 |
taggttaaaatatgataatctaggtgaaaggacaaaaacagggttttgttaaaatttatgatgaaaggttca-nnnnnnnnnnngttgatgtgggaagga |
518 |
Q |
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| T |
6512806 |
taggttaaaatatgataatctaggtgaaaggacaaaaacagggttttgttaaaatttatgatgaaaggttgatttattttttttgttgatgtgagaagga |
6512707 |
T |
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| Q |
519 |
tgaatgggagataaggagaagaatacctactggagttgaggggtttagtacgaacatgaatgagaatgcaattagagttcttctttagaaggtggtccac |
618 |
Q |
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| T |
6512706 |
tgaatgggagataaggagaagaatacctactggaattgagaggtttggtacgaacatgaatgagaatgcaattggagttcttctttagaaggtggtccac |
6512607 |
T |
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| Q |
619 |
cgcccatttcaccgcgcactggctattccgaccggtgttgatggcaatgacggtggttttggcggcggtggcagctcctaattcattagtaatcatttgc |
718 |
Q |
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| T |
6512606 |
cgcccatttcaccgcgcactggctattccgaccggtgttgatggcaatgacggtggttttggcggcggtggcagctcctaattcattagtaatcatttgc |
6512507 |
T |
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| Q |
719 |
atgaagaattaaggttagttacttttttagaaaaaataagctcttgt |
765 |
Q |
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| T |
6512506 |
atgaagaattaaggttagttacttttttag-aaaaataagctcttgt |
6512461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 6513701 - 6513623
Alignment:
| Q |
6 |
cactaggaacatcaatgtcatgcaagaccaattcctttgcctcaatctaaaatgatcaacattcataattatcaacttg |
84 |
Q |
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| T |
6513701 |
cactaggaacatcaatgtcatgcaagaccaattcctttgcctcaatctaaaatgatcaacattcataattatcaacttg |
6513623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 42672249 - 42672167
Alignment:
| Q |
192 |
accccttttctagcacaaaatccacggaagggaagaaaaaattggtgcaattcttcatgagttggtggacgaccatgtttagg |
274 |
Q |
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| T |
42672249 |
accccttttcgagcacaaaatcctcggaaggggagaaagaactgatgcaattcttcttcggtaggtggacgaccttgtttagg |
42672167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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