View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442-Insertion-5 (Length: 508)
Name: NF5442-Insertion-5
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442-Insertion-5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 7 - 508
Target Start/End: Original strand, 43407634 - 43408139
Alignment:
| Q |
7 |
atcacggtagtaaagagtgacaatttcctcaacaaaattaggattagcatcatcttgcaattcttcaagttgaataaactgttcatcaagatgtccctgc |
106 |
Q |
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| T |
43407634 |
atcacggtagtaaagagtgacaatttcctcaacaaaattaggattagcatcatcttgcaattcttcaagttgaataaactgttcatcaagatgtccctgc |
43407733 |
T |
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| Q |
107 |
atatggccaaaagtatttgattagttatgtacccttcaatgaagacacattcacgtatgatattattatttggtaacttaggaaagtgcatatttgaatt |
206 |
Q |
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| T |
43407734 |
atatggccaaaagtatttgattagttagatagccatcaatgaagacacattcacgtatgatattattatttggtaacttaggaaagtgcatatttgaatt |
43407833 |
T |
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| Q |
207 |
agtgattatgagttgatgtggtatttctaatgattggcaatgaaaagaag-----aagaaaaatgagagcaaagtgacaattaaggaacctacctgatca |
301 |
Q |
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| T |
43407834 |
agtgattatgagttgatgtggtatttctaatgattggcaatgaaaagaagaagaaaagaaaaatgagagc-aagtgacaattaaggaacctacctgatca |
43407932 |
T |
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| Q |
302 |
aagagggactgtttcattgcagcaagttgcctgcgagaattgtttctgtccatgattgatgattagaagaagctgaatggacacagaaagaataaaataa |
401 |
Q |
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| T |
43407933 |
aagagggactgtttcattgcagcaagttgcctgcgagaattgtttctgtccatgattgatgattagaagaagctgaatggacacagaaagaataaaataa |
43408032 |
T |
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| Q |
402 |
gggaatgaacaatgttgtgtaactagttgttgtagttggaattaaaatacatgattttgaagtgagggtgtggcagggtttttatagcactcaaaaaatg |
501 |
Q |
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| T |
43408033 |
gggaatgaacaatgttgtgtaactagttgttgtagttggaattaaaatacatgattttgaagtgagggtgtggcagggtttttatagcactcaaaaaatg |
43408132 |
T |
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| Q |
502 |
ttctgtc |
508 |
Q |
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| T |
43408133 |
ttctgtc |
43408139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 7 - 151
Target Start/End: Original strand, 43395416 - 43395560
Alignment:
| Q |
7 |
atcacggtagtaaagagtgacaatttcctcaacaaaattaggattagcatcatcttgcaattcttcaagttgaataaactgttcatcaagatgtccctgc |
106 |
Q |
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| T |
43395416 |
atcacggtagtaaagagtgacaatttcctcaacaaaattaggattagcatcatcttgcaattcttcaagttgaataaactgttcatcaagatgtccctgc |
43395515 |
T |
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| Q |
107 |
atatggccaaaagtatttgattagttatgtacccttcaatgaaga |
151 |
Q |
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| T |
43395516 |
atatggccaaaagtatttgattagttagatagccatcaatgaaga |
43395560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 275 - 393
Target Start/End: Original strand, 43395678 - 43395799
Alignment:
| Q |
275 |
gtgacaattaaggaacctacctgatcaaagagggactgtttcattgcagcaagttgcctgcgagaattgtttctgtccatgattgatgatt---agaaga |
371 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
43395678 |
gtgaaaattaaggaacctacttgatcaaagagggactgtttcattgcagcaagttgtctgcgagaattgtttctgtccatgattgatgattagaagaaga |
43395777 |
T |
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| Q |
372 |
agctgaatggacacagaaagaa |
393 |
Q |
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| T |
43395778 |
agctgaagggacacagaaagaa |
43395799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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