View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442-Insertion-6 (Length: 487)
Name: NF5442-Insertion-6
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 8 - 470
Target Start/End: Complemental strand, 47565593 - 47565133
Alignment:
| Q |
8 |
tgtattggtgtcgccctctcatgttcttacaacttgatagcggttcttttgggttctacatttggtgagttgtcataagatcatagaacctatctgtttg |
107 |
Q |
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| T |
47565593 |
tgtattggtgtcgccctctcatgtttttacaacttgatagcggttcttttgggttctacatttggtgagtcgtcataagatcatagaacctatctgtttg |
47565494 |
T |
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| Q |
108 |
agtttgaaagctacgaaaactcgttggcatattctggttggatgtgttgtataattcaactaccaagtagttagatgtagagttagttagtaactaacta |
207 |
Q |
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| T |
47565493 |
agtttgaaagctacgaaaactcgttggcatattctggttggatgtgttgtataattcaactaccaagtagttagaagtagagttagttagtaactaacta |
47565394 |
T |
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| Q |
208 |
gtttgttgtgaatttgtttgcttacttgtaattcaagtaagagatcaagtaaaatactaatgcaaacgtaccataaaaactactcaattcataatcaata |
307 |
Q |
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| T |
47565393 |
gtttgttgtgaattagtttgcttacttgttattcaagtaagagatcaagtaaaatacttatgcaaacgtaccataaaaactactcaattcataatcaata |
47565294 |
T |
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| Q |
308 |
aaacacaaattacacacacacgctcttttcttctctcaatttggtatattttctctctttcttagagtgcaagaatactcttggcagagttggtttgtaa |
407 |
Q |
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| T |
47565293 |
aaacacaaattacac--acactctcttttcttctctcaatttggtatattttctctctttcttagagtgcaagaatactcttggcagagttggtttgtaa |
47565196 |
T |
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| Q |
408 |
cgtgggggtttgtggcctattacgaagcctaagatattagaggtgcaaaatttgcaggagctg |
470 |
Q |
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| T |
47565195 |
cgtgggggtttgtggcctattacgaagcctatgatattagaggtgcaaaatttgcaggagctg |
47565133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 36526961 - 36527056
Alignment:
| Q |
157 |
tataattcaactaccaagtagttagatgtagagttagttagtaactaactagtttgttgtgaatttgtttgcttacttgtaattcaagtaagagat |
252 |
Q |
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||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||| ||| || ||| |||||||||| ||||||||||||||| |
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| T |
36526961 |
tataattcaactatcgagtagttagaggtagagttagttagtaactaactagtttgttatgagttggttagcttacttgttattcaagtaagagat |
36527056 |
T |
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