View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5442-Insertion-8 (Length: 393)

Name: NF5442-Insertion-8
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5442-Insertion-8
NF5442-Insertion-8
[»] chr1 (1 HSPs)
chr1 (8-393)||(36120489-36120885)


Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 393
Target Start/End: Complemental strand, 36120885 - 36120489
Alignment:
Q  8 aatagatcgatggatgaatgaatcaatttacaaaagaaaatatccatcggttatttatgtactttgtttaattaatcaacttatcggca----------- 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||               
T  36120885 aatagatcgatggatgaatgaatcaatttacaaaagaaaatatccataagttatttatgtactttgtttaattaatcaacttatcgacatctctatcgac 36120786  T
Q  97 -gctacctagagttcctattttgaggtgtcctactcaacagtccgcctcagtaacagtgcagagttgaaaaatgttgactagtaagatggtggtgggtac 195  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36120785 agctacctagaattcctattttgaggtgtcctactcaacagtccgcctctgtaacagtgcagagttgaaaaatgttgactagtaaaatggtggtgggtac 36120686  T
Q  196 gtaccagaactcttacatcatcatcagattgttgtttatgtttatgtttatgggaagcacattcacatttctctttttattttagtattttggttccact 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36120685 gtaccagaactcttacatcatcatcagattgttgtttatgtttatgtttatgggaagcacattcacatttctctttttattttagtattttggttccact 36120586  T
Q  296 tttgtgcgcgtactacactgtcttaatcgtaatcccaccgtcccattctttggattttatatgtttcttctttttaagtttcacagctgccattccct 393  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36120585 tttgtgcgcgtactacactgtcttaatcgtaatcccaccgtccc-ttctttggattttatatgtttcttctttttaagtttcacagctgccattccct 36120489  T

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