View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_high_10 (Length: 369)
Name: NF5442_high_10
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 44154333 - 44154520
Alignment:
| Q |
1 |
catgtatttgatggagtttgacttgtctttgaacacataatattctccttctactgttactgcatcattagcatccatcaatcaatc--------aaaca |
92 |
Q |
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| T |
44154333 |
catgtatttgatggagtttgacttgtctttgaacacataatattctccttctactgttactgcatcattagcatccatcaatcaatcaattaatcaaaca |
44154432 |
T |
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| Q |
93 |
ttaattaccaacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaacatccttgaattca |
180 |
Q |
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| T |
44154433 |
ttaattaccaacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaacatccttgaattca |
44154520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 40899058 - 40899237
Alignment:
| Q |
1 |
catgtatttgatggagtttgacttgtctttgaacacataatattctccttctactgttactgcatcattagcatccatcaatcaatcaaacattaattac |
100 |
Q |
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| T |
40899058 |
catgcatttgatggagtttgatttgtctttgaacacataatattctccttttactgttacagcatcgttagcatccatcaatcaatcaaaaattaattac |
40899157 |
T |
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| Q |
101 |
caacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaacatccttgaattca |
180 |
Q |
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| T |
40899158 |
caacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaacatccttgaattca |
40899237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 208 - 354
Target Start/End: Original strand, 44154548 - 44154694
Alignment:
| Q |
208 |
gcgtgatgaaacattaacaaatgaaatatgccagcaagaagagtagtaatactttcataatcaaagccataatctgctgatttgggtccctccgccagtt |
307 |
Q |
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| T |
44154548 |
gcgtgatgaaacattaaaaaatgaaatatgccagcaagaagagtagtaatactttcataatcaaagccataatctgatgatttgggtccctccgccagtt |
44154647 |
T |
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| Q |
308 |
tatcagagctcatgaaatcgtcttttctcttcttcgactttggaaat |
354 |
Q |
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| T |
44154648 |
tatcagagctcatgaaatcgtcttttctcttcttcgactttggaaat |
44154694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 208 - 349
Target Start/End: Original strand, 40899265 - 40899406
Alignment:
| Q |
208 |
gcgtgatgaaacattaacaaatgaaatatgccagcaagaagagtagtaatactttcataatcaaagccataatctgctgatttgggtccctccgccagtt |
307 |
Q |
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| T |
40899265 |
gcgtgatgaaacattaacaaatgaaatatgccagcaagaagagtagtaatactttcataatcaaagccataatctgcttttttcggttcctccgccagtt |
40899364 |
T |
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| Q |
308 |
tatcagagctcatgaaatcgtcttttctcttcttcgactttg |
349 |
Q |
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| T |
40899365 |
tatcagagctcatgacatcgcattttctctttttcgactttg |
40899406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 40893829 - 40893762
Alignment:
| Q |
101 |
caacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaaca |
168 |
Q |
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| T |
40893829 |
caacaacaacacattcaaaaatcataattaaaccatctaaactaaaacaaatgaaatcagaaacaaca |
40893762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 44154258 - 44154303
Alignment:
| Q |
216 |
aaacattaacaaatgaaatatgccagcaagaagagtagtaatactt |
261 |
Q |
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| T |
44154258 |
aaacattaacaaatgaaataagtcagaaagaagagtagtaatactt |
44154303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 40898983 - 40899028
Alignment:
| Q |
216 |
aaacattaacaaatgaaatatgccagcaagaagagtagtaatactt |
261 |
Q |
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| T |
40898983 |
aaacattaacaactgaaataagtcagaaagaagagtagtaatactt |
40899028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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