View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_high_14 (Length: 359)
Name: NF5442_high_14
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 25892976 - 25893211
Alignment:
| Q |
18 |
aaaccttgacactactctttgtttccttcaataccgaacaggagggaatctcattttgagtaataaatgatggaagcctatttataaagtaacaagcctt |
117 |
Q |
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| T |
25892976 |
aaaccttgacactactctttgtttccttcaagaccgaacaagagggactct-attttgagtaataaatgatggaagcctatttatcaattaacaagcctt |
25893074 |
T |
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| Q |
118 |
tttatataaacaataaaataatgnnnnnnncgaagcaatagtaccaatacattttaatttgtgagagtacgtaatagtttccaaaacttttacctcttct |
217 |
Q |
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| T |
25893075 |
tttata--aacaataaaataatgtttttt-cgaagcaatagcaccaatacattttaatttgtgaccgtacgtaatagtttccaaaacttttacctcttct |
25893171 |
T |
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| Q |
218 |
aatattcatatgggctaaaatagagatattttcgtagctc |
257 |
Q |
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| T |
25893172 |
aatattcatatgagctaaaatagagatattttcgtagctc |
25893211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 25816449 - 25816395
Alignment:
| Q |
54 |
aacaggagggaatctcattttgagtaataaatgatggaagcctatttataaagta |
108 |
Q |
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| T |
25816449 |
aacagtagggactctcattttgagtaacaaatgatggaagcctatttatcaagta |
25816395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 320 - 351
Target Start/End: Original strand, 25893210 - 25893241
Alignment:
| Q |
320 |
tcgggcaaatatatccttaagaacggtgcctt |
351 |
Q |
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| T |
25893210 |
tcgggcaaatatatccttaagaacggtgcctt |
25893241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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