View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_high_18 (Length: 331)
Name: NF5442_high_18
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 4 - 315
Target Start/End: Complemental strand, 39731892 - 39731584
Alignment:
| Q |
4 |
atgttgaaaagcattaatcaccactcaaaaactattttgcttagcaagctggtttcaaagaatagcttaattaaattaaagaatgccaaaaggatattct |
103 |
Q |
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| T |
39731892 |
atgttgaaaagcattaatcaccactcaaaaactattttgcttagcaagctggtttcaaagaatagcttaattaaattaaagaatgccaaaaggatattct |
39731793 |
T |
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| Q |
104 |
ttgtaacaatggagtcagacatggtctggaacctactttgctagccaaaacnnnnnnnnnnnnntctagttagcagcagggaaacatattctgaaaattg |
203 |
Q |
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| T |
39731792 |
ttgtaacaatggagtcagacatggtctggaacctactttgctggccaaa---caaaaaaaaatatctagttagcagcagggaaacatattctgaaaattg |
39731696 |
T |
|
| Q |
204 |
gtaaagcaactcaaagattctagacaatacaactcaccatctgctgaagaagattttgcacctgaaaagagtaacagtggcatggacaaagtcagaaact |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39731695 |
gtaaagcaactcaaagattctagacaatacaactcaccatctgctgaagaagattttgcacctgaaaagagtaacagttgcatggacaaagtcagaaact |
39731596 |
T |
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| Q |
304 |
gattgacattta |
315 |
Q |
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| T |
39731595 |
gattgacattta |
39731584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 44246743 - 44246783
Alignment:
| Q |
234 |
aactcaccatctgctgaagaagattttgcacctgaaaagag |
274 |
Q |
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| T |
44246743 |
aactcaccatctgctgaagaagattttgcacctgaaaagag |
44246783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 44246496 - 44246550
Alignment:
| Q |
91 |
aaaaggatattctttgtaacaatggagtcagacatggtctggaacctactttgct |
145 |
Q |
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| T |
44246496 |
aaaaggatattctttgaaatgatggagtcagacattgtctggaacctagtttgct |
44246550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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